library(maaslin3)
### this one works
path_table <- read.table("edited_pathabundance.txt",
header = TRUE,
sep = "\t",
stringsAsFactors = FALSE)
# path_table$Path <- gsub("-", "_", path_table$Path)
# path_table$Path <- gsub(",", "_", path_table$Path)
# path_table$Path <- gsub("\\(", " ", path_table$Path)
# path_table$Path <- gsub("\\)", " ", path_table$Path)
# path_table$Path <- gsub("\\|", " ", path_table$Path)
# path_table$Path <- gsub("&", " ", path_table$Path)
# path_table$Path <- gsub("\\.", "_", path_table$Path)
# path_table$Path <- gsub("/", "_", path_table$Path)
# path_table$Path <- gsub("\\\\", "_", path_table$Path)
# path_table$Path <- gsub("'", "_", path_table$Path)
# path_table$Path <- gsub("\"", "_", path_table$Path)
# path_table$Path <- gsub("“", "_", path_table$Path)
# path_table$Path <- gsub("”", "_", path_table$Path)
# path_table$Path <- gsub(":", "_", path_table$Path)
# path_table$Path <- gsub(";", "_", path_table$Path)
# Transpose the data frame
t_path_table <- t(path_table)
# Convert the transposed matrix back to a data frame (optional)
t_path_table <- as.data.frame(t_path_table)
# View the transposed data frame
print(t_path_table)
write.table(t_path_table, "t_path_table.txt", sep = "\t")
t_path_table <- read.table("t_path_table.txt",
header = TRUE,
sep = "\t",
stringsAsFactors = FALSE)
t_path_table$Path <- gsub("-", "_", t_path_table$Path)
t_path_table$Path <- gsub(",", "_", t_path_table$Path)
t_path_table$Path <- gsub("\\(", " ", t_path_table$Path)
t_path_table$Path <- gsub("\\)", " ", t_path_table$Path)
t_path_table$Path <- gsub("\\|", " ", t_path_table$Path)
t_path_table$Path <- gsub("&", " ", t_path_table$Path)
t_path_table$Path <- gsub("\\.", "_", t_path_table$Path)
t_path_table$Path <- gsub("/", "_", t_path_table$Path)
t_path_table$Path <- gsub("\\\\", "_", t_path_table$Path)
t_path_table$Path <- gsub("'", "_", t_path_table$Path)
t_path_table$Path <- gsub("\"", "_", t_path_table$Path)
t_path_table$Path <- gsub("“", "_", t_path_table$Path)
t_path_table$Path <- gsub("”", "_", t_path_table$Path)
t_path_table$Path <- gsub(":", "_", t_path_table$Path)
t_path_table$Path <- gsub(";", "_", t_path_table$Path)
metadata <- read.table("howlermeta.txt",
header = TRUE,
sep = "\t",
stringsAsFactors = FALSE)
metadata$SampleID <- gsub("-", "_", metadata$SampleID)
metadata$Individual <-
factor(metadata$Individual, levels = c("Dos" , "Hugo", "Isa", "Jupiler", "Melanie", "Maia", "Uno"))
metadata$Sex <-
factor(metadata$Sex, levels = c("Male","Female"))
metadata$Season <-
factor(metadata$Season, levels = c( "Dry", "Intermediate", "Rain" ))
metadata$Age <-
factor(metadata$Age)
colnames(t_path_table) <- gsub("\\.", "_", colnames(t_path_table))
row.names(t_path_table) = t_path_table$Path
t_path_table$Path <- NULL
row.names(metadata) = metadata$SampleID
metadata$SampleID <- NULL
metadata
t_path_table
NA
set.seed(1)
fit_out <- maaslin3(input_data = t_path_table ,
input_metadata = metadata,
output = 'maaslin3_path',
formula = '~ Individual + Season ',
normalization = 'TSS',
transform = 'LOG',
augment = TRUE,
standardize = TRUE,
max_significance = 0.1,
median_comparison_abundance = TRUE,
median_comparison_prevalence = FALSE,
max_pngs = 250,
cores = 1)
2024-11-26 12:07:56.328605 INFO::Writing function arguments to log file
2024-11-26 12:07:56.353993 INFO::Verifying options selected are valid
2024-11-26 12:07:56.355467 INFO::Determining format of input files
2024-11-26 12:07:56.356882 INFO::Input format is data samples as rows and metadata samples as rows
2024-11-26 12:07:56.363482 INFO::Running selected normalization method: TSS
2024-11-26 12:07:56.369757 INFO::Writing normalized data to file maaslin3_path/features/data_norm.tsv
2024-11-26 12:07:56.418062 INFO::Filter data based on min abundance and min prevalence
2024-11-26 12:07:56.419655 INFO::Total samples in data: 100
2024-11-26 12:07:56.421056 INFO::Min samples required with min abundance for a feature not to be filtered: 0.000000
2024-11-26 12:07:56.445594 INFO::Total filtered features: 0
2024-11-26 12:07:56.447368 INFO::Filtered feature names from abundance and prevalence filtering:
2024-11-26 12:07:56.451897 INFO::Total features filtered by non-zero variance filtering: 0
2024-11-26 12:07:56.453426 INFO::Filtered feature names from variance filtering:
2024-11-26 12:07:56.454884 INFO::Writing filtered data to file maaslin3_path/features/filtered_data.tsv
2024-11-26 12:07:56.504512 INFO::Running selected transform method: LOG
2024-11-26 12:07:56.508893 INFO::Writing normalized, filtered, transformed data to file maaslin3_path/features/data_transformed.tsv
2024-11-26 12:07:56.988096 INFO::Factor detected for categorial metadata 'Individual'. Using as-is.
2024-11-26 12:07:56.990497 INFO::Factor detected for categorial metadata 'Season'. Using as-is.
2024-11-26 12:07:56.992436 INFO::Applying z-score to standardize continuous metadata
2024-11-26 12:07:57.004809 INFO::Running the linear model component
| | 0 % ~calculating 2024-11-26 12:07:57.029215 INFO::Fitting model to feature number 1, X1CMET2_PWY__folate_transformations_III__E__coli_
2024-11-26 12:07:57.047149 INFO::Fitting model to feature number 2, X1CMET2_PWY__folate_transformations_III__E__coli__unclassified
2024-11-26 12:07:57.051266 INFO::Fitting model to feature number 3, ANAEROFRUCAT_PWY__homolactic_fermentation
|+ | 1 % ~03s 2024-11-26 12:07:57.05993 INFO::Fitting model to feature number 4, ANAEROFRUCAT_PWY__homolactic_fermentation_unclassified
2024-11-26 12:07:57.064742 INFO::Fitting model to feature number 5, ANAGLYCOLYSIS_PWY__glycolysis_III__from_glucose_
2024-11-26 12:07:57.069598 INFO::Fitting model to feature number 6, ANAGLYCOLYSIS_PWY__glycolysis_III__from_glucose__unclassified
|++ | 2 % ~02s 2024-11-26 12:07:57.078123 INFO::Fitting model to feature number 7, ARGSYN_PWY__L_arginine_biosynthesis_I__via_L_ornithine_
2024-11-26 12:07:57.082247 INFO::Fitting model to feature number 8, ARGSYN_PWY__L_arginine_biosynthesis_I__via_L_ornithine__unclassified
2024-11-26 12:07:57.08665 INFO::Fitting model to feature number 9, ARGSYNBSUB_PWY__L_arginine_biosynthesis_II__acetyl_cycle_
|++ | 3 % ~02s 2024-11-26 12:07:57.096347 INFO::Fitting model to feature number 10, ARGSYNBSUB_PWY__L_arginine_biosynthesis_II__acetyl_cycle__unclassified
2024-11-26 12:07:57.100937 INFO::Fitting model to feature number 11, ARO_PWY__chorismate_biosynthesis_I
2024-11-26 12:07:57.105192 INFO::Fitting model to feature number 12, ARO_PWY__chorismate_biosynthesis_I_unclassified
|+++ | 4 % ~02s 2024-11-26 12:07:57.115252 INFO::Fitting model to feature number 13, ASPASN_PWY__superpathway_of_L_aspartate_and_L_asparagine_biosynthesis
2024-11-26 12:07:57.119419 INFO::Fitting model to feature number 14, ASPASN_PWY__superpathway_of_L_aspartate_and_L_asparagine_biosynthesis_unclassified
2024-11-26 12:07:57.123459 INFO::Fitting model to feature number 15, BRANCHED_CHAIN_AA_SYN_PWY__superpathway_of_branched_chain_amino_acid_biosynthesis
|+++ | 5 % ~02s 2024-11-26 12:07:57.13253 INFO::Fitting model to feature number 16, BRANCHED_CHAIN_AA_SYN_PWY__superpathway_of_branched_chain_amino_acid_biosynthesis_unclassified
2024-11-26 12:07:57.137112 INFO::Fitting model to feature number 17, CALVIN_PWY__Calvin_Benson_Bassham_cycle
2024-11-26 12:07:57.141294 INFO::Fitting model to feature number 18, CALVIN_PWY__Calvin_Benson_Bassham_cycle_unclassified
|++++ | 6 % ~02s 2024-11-26 12:07:57.924979 INFO::Fitting model to feature number 19, CENTFERM_PWY__pyruvate_fermentation_to_butanoate
2024-11-26 12:07:58.626016 INFO::Fitting model to feature number 20, CENTFERM_PWY__pyruvate_fermentation_to_butanoate_unclassified
2024-11-26 12:07:58.630124 INFO::Fitting model to feature number 21, COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals_
|++++ | 7 % ~21s 2024-11-26 12:07:58.652908 INFO::Fitting model to feature number 22, COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals__unclassified
2024-11-26 12:07:58.657541 INFO::Fitting model to feature number 23, COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic_
2024-11-26 12:07:58.661771 INFO::Fitting model to feature number 24, COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic__unclassified
|+++++ | 8 % ~18s 2024-11-26 12:07:58.66965 INFO::Fitting model to feature number 25, COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I
2024-11-26 12:07:58.673866 INFO::Fitting model to feature number 26, COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I_unclassified
2024-11-26 12:07:58.678055 INFO::Fitting model to feature number 27, COLANSYN_PWY__colanic_acid_building_blocks_biosynthesis
|+++++ | 9 % ~16s 2024-11-26 12:07:58.685869 INFO::Fitting model to feature number 28, COLANSYN_PWY__colanic_acid_building_blocks_biosynthesis_unclassified
2024-11-26 12:07:58.69017 INFO::Fitting model to feature number 29, COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis
2024-11-26 12:07:58.694544 INFO::Fitting model to feature number 30, COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis_unclassified
|++++++ | 10% ~14s 2024-11-26 12:07:58.703439 INFO::Fitting model to feature number 31, DAPLYSINESYN_PWY__L_lysine_biosynthesis_I
2024-11-26 12:07:58.707944 INFO::Fitting model to feature number 32, DAPLYSINESYN_PWY__L_lysine_biosynthesis_I_unclassified
2024-11-26 12:07:58.712074 INFO::Fitting model to feature number 33, DARABCATK12_PWY__D_arabinose_degradation_I
|++++++ | 11% ~13s 2024-11-26 12:07:58.720967 INFO::Fitting model to feature number 34, DARABCATK12_PWY__D_arabinose_degradation_I_unclassified
2024-11-26 12:07:58.725225 INFO::Fitting model to feature number 35, DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis
2024-11-26 12:07:58.729406 INFO::Fitting model to feature number 36, DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis_unclassified
|+++++++ | 12% ~12s 2024-11-26 12:07:58.738097 INFO::Fitting model to feature number 37, FERMENTATION_PWY__mixed_acid_fermentation
2024-11-26 12:07:58.742335 INFO::Fitting model to feature number 38, FERMENTATION_PWY__mixed_acid_fermentation_unclassified
2024-11-26 12:07:58.746491 INFO::Fitting model to feature number 39, FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation
|+++++++ | 14% ~11s 2024-11-26 12:07:58.755257 INFO::Fitting model to feature number 40, FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation_unclassified
2024-11-26 12:07:58.759321 INFO::Fitting model to feature number 41, FUCCAT_PWY__fucose_degradation
2024-11-26 12:07:58.763838 INFO::Fitting model to feature number 42, FUCCAT_PWY__fucose_degradation_unclassified
|++++++++ | 15% ~10s 2024-11-26 12:07:58.775821 INFO::Fitting model to feature number 43, GALACT_GLUCUROCAT_PWY__superpathway_of_hexuronide_and_hexuronate_degradation
2024-11-26 12:07:58.782486 INFO::Fitting model to feature number 44, GALACT_GLUCUROCAT_PWY__superpathway_of_hexuronide_and_hexuronate_degradation_unclassified
2024-11-26 12:07:58.786543 INFO::Fitting model to feature number 45, GALACTUROCAT_PWY__D_galacturonate_degradation_I
|++++++++ | 16% ~10s 2024-11-26 12:07:58.794911 INFO::Fitting model to feature number 46, GALACTUROCAT_PWY__D_galacturonate_degradation_I_unclassified
2024-11-26 12:07:58.799216 INFO::Fitting model to feature number 47, GLCMANNANAUT_PWY__superpathway_of_N_acetylglucosamine__N_acetylmannosamine_and_N_acetylneuraminate_degradation
2024-11-26 12:07:58.803882 INFO::Fitting model to feature number 48, GLCMANNANAUT_PWY__superpathway_of_N_acetylglucosamine__N_acetylmannosamine_and_N_acetylneuraminate_degradation_unclassified
|+++++++++ | 17% ~09s 2024-11-26 12:07:58.813381 INFO::Fitting model to feature number 49, GLUCONEO_PWY__gluconeogenesis_I
2024-11-26 12:07:58.864196 INFO::Fitting model to feature number 50, GLUCONEO_PWY__gluconeogenesis_I_unclassified
2024-11-26 12:07:58.868889 INFO::Fitting model to feature number 51, GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation
|+++++++++ | 18% ~09s 2024-11-26 12:07:58.880595 INFO::Fitting model to feature number 52, GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation_unclassified
2024-11-26 12:07:58.885268 INFO::Fitting model to feature number 53, GLUTORN_PWY__L_ornithine_biosynthesis_I
2024-11-26 12:07:58.889445 INFO::Fitting model to feature number 54, GLUTORN_PWY__L_ornithine_biosynthesis_I_unclassified
|++++++++++ | 19% ~08s 2024-11-26 12:07:58.898624 INFO::Fitting model to feature number 55, GLYCOGENSYNTH_PWY__glycogen_biosynthesis_I__from_ADP_D_Glucose_
2024-11-26 12:07:58.903318 INFO::Fitting model to feature number 56, GLYCOGENSYNTH_PWY__glycogen_biosynthesis_I__from_ADP_D_Glucose__unclassified
2024-11-26 12:07:58.90769 INFO::Fitting model to feature number 57, GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate_
|++++++++++ | 20% ~08s 2024-11-26 12:07:59.103913 INFO::Fitting model to feature number 58, GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate__unclassified
2024-11-26 12:07:59.108182 INFO::Fitting model to feature number 59, HISTSYN_PWY__L_histidine_biosynthesis
2024-11-26 12:07:59.11229 INFO::Fitting model to feature number 60, HISTSYN_PWY__L_histidine_biosynthesis_unclassified
|+++++++++++ | 21% ~08s 2024-11-26 12:07:59.120746 INFO::Fitting model to feature number 61, HOMOSER_METSYN_PWY__L_methionine_biosynthesis_I
2024-11-26 12:07:59.125744 INFO::Fitting model to feature number 62, HOMOSER_METSYN_PWY__L_methionine_biosynthesis_I_unclassified
2024-11-26 12:07:59.130627 INFO::Fitting model to feature number 63, HSERMETANA_PWY__L_methionine_biosynthesis_III
|+++++++++++ | 22% ~08s 2024-11-26 12:07:59.140103 INFO::Fitting model to feature number 64, HSERMETANA_PWY__L_methionine_biosynthesis_III_unclassified
2024-11-26 12:07:59.145294 INFO::Fitting model to feature number 65, ILEUSYN_PWY__L_isoleucine_biosynthesis_I__from_threonine_
2024-11-26 12:07:59.388093 INFO::Fitting model to feature number 66, ILEUSYN_PWY__L_isoleucine_biosynthesis_I__from_threonine__unclassified
|++++++++++++ | 23% ~09s 2024-11-26 12:07:59.821436 INFO::Fitting model to feature number 67, MET_SAM_PWY__superpathway_of_S_adenosyl_L_methionine_biosynthesis
2024-11-26 12:07:59.826071 INFO::Fitting model to feature number 68, MET_SAM_PWY__superpathway_of_S_adenosyl_L_methionine_biosynthesis_unclassified
2024-11-26 12:07:59.830439 INFO::Fitting model to feature number 69, METH_ACETATE_PWY__methanogenesis_from_acetate
|++++++++++++ | 24% ~09s 2024-11-26 12:07:59.839802 INFO::Fitting model to feature number 70, METH_ACETATE_PWY__methanogenesis_from_acetate_unclassified
2024-11-26 12:07:59.844721 INFO::Fitting model to feature number 71, METSYN_PWY__superpathway_of_L_homoserine_and_L_methionine_biosynthesis
2024-11-26 12:07:59.849535 INFO::Fitting model to feature number 72, METSYN_PWY__superpathway_of_L_homoserine_and_L_methionine_biosynthesis_unclassified
|+++++++++++++ | 25% ~08s 2024-11-26 12:07:59.859027 INFO::Fitting model to feature number 73, NONMEVIPP_PWY__methylerythritol_phosphate_pathway_I
2024-11-26 12:07:59.867918 INFO::Fitting model to feature number 74, NONMEVIPP_PWY__methylerythritol_phosphate_pathway_I_unclassified
2024-11-26 12:07:59.87289 INFO::Fitting model to feature number 75, NONOXIPENT_PWY__pentose_phosphate_pathway__non_oxidative_branch__I
|++++++++++++++ | 26% ~08s 2024-11-26 12:07:59.884047 INFO::Fitting model to feature number 76, NONOXIPENT_PWY__pentose_phosphate_pathway__non_oxidative_branch__I_unclassified
2024-11-26 12:07:59.888483 INFO::Fitting model to feature number 77, OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli_
2024-11-26 12:07:59.90019 INFO::Fitting model to feature number 78, OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli__unclassified
|++++++++++++++ | 27% ~08s 2024-11-26 12:07:59.91052 INFO::Fitting model to feature number 79, P41_PWY__pyruvate_fermentation_to_acetate_and__S__lactate_I
2024-11-26 12:07:59.91507 INFO::Fitting model to feature number 80, P41_PWY__pyruvate_fermentation_to_acetate_and__S__lactate_I_unclassified
2024-11-26 12:07:59.919145 INFO::Fitting model to feature number 81, P461_PWY__hexitol_fermentation_to_lactate__formate__ethanol_and_acetate
|+++++++++++++++ | 28% ~07s 2024-11-26 12:07:59.929105 INFO::Fitting model to feature number 82, PANTO_PWY__phosphopantothenate_biosynthesis_I
2024-11-26 12:07:59.934234 INFO::Fitting model to feature number 83, PANTO_PWY__phosphopantothenate_biosynthesis_I_unclassified
2024-11-26 12:07:59.93874 INFO::Fitting model to feature number 84, PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria_
|+++++++++++++++ | 29% ~07s 2024-11-26 12:07:59.949364 INFO::Fitting model to feature number 85, PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria__unclassified
2024-11-26 12:07:59.953902 INFO::Fitting model to feature number 86, PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:07:59.958445 INFO::Fitting model to feature number 87, PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing__unclassified
|++++++++++++++++ | 30% ~07s 2024-11-26 12:08:00.687262 INFO::Fitting model to feature number 88, PPGPPMET_PWY__ppGpp_metabolism
2024-11-26 12:08:00.880407 INFO::Fitting model to feature number 89, PPGPPMET_PWY__ppGpp_metabolism_unclassified
2024-11-26 12:08:00.884311 INFO::Fitting model to feature number 90, PWY_1042__glycolysis_IV
|++++++++++++++++ | 31% ~08s 2024-11-26 12:08:00.894381 INFO::Fitting model to feature number 91, PWY_1042__glycolysis_IV_unclassified
2024-11-26 12:08:00.898546 INFO::Fitting model to feature number 92, PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis
2024-11-26 12:08:00.902601 INFO::Fitting model to feature number 93, PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis_unclassified
|+++++++++++++++++ | 32% ~08s 2024-11-26 12:08:00.911444 INFO::Fitting model to feature number 94, PWY_2942__L_lysine_biosynthesis_III
2024-11-26 12:08:00.91572 INFO::Fitting model to feature number 95, PWY_2942__L_lysine_biosynthesis_III_unclassified
2024-11-26 12:08:00.919762 INFO::Fitting model to feature number 96, PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I
|+++++++++++++++++ | 33% ~08s 2024-11-26 12:08:00.931524 INFO::Fitting model to feature number 97, PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I_unclassified
2024-11-26 12:08:00.935609 INFO::Fitting model to feature number 98, PWY_3841__folate_transformations_II__plants_
2024-11-26 12:08:00.940569 INFO::Fitting model to feature number 99, PWY_3841__folate_transformations_II__plants__unclassified
|++++++++++++++++++ | 34% ~07s 2024-11-26 12:08:00.951256 INFO::Fitting model to feature number 100, PWY_5097__L_lysine_biosynthesis_VI
2024-11-26 12:08:00.956123 INFO::Fitting model to feature number 101, PWY_5097__L_lysine_biosynthesis_VI_unclassified
2024-11-26 12:08:00.960644 INFO::Fitting model to feature number 102, PWY_5100__pyruvate_fermentation_to_acetate_and_lactate_II
|++++++++++++++++++ | 35% ~07s 2024-11-26 12:08:00.972762 INFO::Fitting model to feature number 103, PWY_5100__pyruvate_fermentation_to_acetate_and_lactate_II_unclassified
2024-11-26 12:08:00.978269 INFO::Fitting model to feature number 104, PWY_5103__L_isoleucine_biosynthesis_III
2024-11-26 12:08:00.982834 INFO::Fitting model to feature number 105, PWY_5103__L_isoleucine_biosynthesis_III_unclassified
|+++++++++++++++++++ | 36% ~07s 2024-11-26 12:08:01.163601 INFO::Fitting model to feature number 106, PWY_5130__2_oxobutanoate_degradation_I
2024-11-26 12:08:01.169189 INFO::Fitting model to feature number 107, PWY_5130__2_oxobutanoate_degradation_I_unclassified
2024-11-26 12:08:01.173021 INFO::Fitting model to feature number 108, PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline_
|+++++++++++++++++++ | 38% ~07s 2024-11-26 12:08:01.187052 INFO::Fitting model to feature number 109, PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline__unclassified
2024-11-26 12:08:01.191636 INFO::Fitting model to feature number 110, PWY_5188__tetrapyrrole_biosynthesis_I__from_glutamate_
2024-11-26 12:08:01.195587 INFO::Fitting model to feature number 111, PWY_5188__tetrapyrrole_biosynthesis_I__from_glutamate__unclassified
|++++++++++++++++++++ | 39% ~07s 2024-11-26 12:08:01.387966 INFO::Fitting model to feature number 112, PWY_5189__tetrapyrrole_biosynthesis_II__from_glycine_
2024-11-26 12:08:01.423718 INFO::Fitting model to feature number 113, PWY_5345__superpathway_of_L_methionine_biosynthesis__by_sulfhydrylation_
2024-11-26 12:08:01.427621 INFO::Fitting model to feature number 114, PWY_5345__superpathway_of_L_methionine_biosynthesis__by_sulfhydrylation__unclassified
|++++++++++++++++++++ | 40% ~07s 2024-11-26 12:08:01.441432 INFO::Fitting model to feature number 115, PWY_5347__superpathway_of_L_methionine_biosynthesis__transsulfuration_
2024-11-26 12:08:01.445577 INFO::Fitting model to feature number 116, PWY_5347__superpathway_of_L_methionine_biosynthesis__transsulfuration__unclassified
2024-11-26 12:08:01.449452 INFO::Fitting model to feature number 117, PWY_5484__glycolysis_II__from_fructose_6_phosphate_
|+++++++++++++++++++++ | 41% ~06s 2024-11-26 12:08:01.460134 INFO::Fitting model to feature number 118, PWY_5484__glycolysis_II__from_fructose_6_phosphate__unclassified
2024-11-26 12:08:01.464076 INFO::Fitting model to feature number 119, PWY_5505__L_glutamate_and_L_glutamine_biosynthesis
2024-11-26 12:08:01.46785 INFO::Fitting model to feature number 120, PWY_5505__L_glutamate_and_L_glutamine_biosynthesis_unclassified
|+++++++++++++++++++++ | 42% ~07s 2024-11-26 12:08:01.68936 INFO::Fitting model to feature number 121, PWY_5659__GDP_mannose_biosynthesis
2024-11-26 12:08:01.694281 INFO::Fitting model to feature number 122, PWY_5659__GDP_mannose_biosynthesis_unclassified
2024-11-26 12:08:01.69823 INFO::Fitting model to feature number 123, PWY_5667__CDP_diacylglycerol_biosynthesis_I
|++++++++++++++++++++++ | 43% ~06s 2024-11-26 12:08:01.706429 INFO::Fitting model to feature number 124, PWY_5667__CDP_diacylglycerol_biosynthesis_I_unclassified
2024-11-26 12:08:01.710553 INFO::Fitting model to feature number 125, PWY_5686__UMP_biosynthesis_I
2024-11-26 12:08:01.714413 INFO::Fitting model to feature number 126, PWY_5686__UMP_biosynthesis_I_unclassified
|++++++++++++++++++++++ | 44% ~06s 2024-11-26 12:08:01.723727 INFO::Fitting model to feature number 127, PWY_5695__inosine_5_phosphate_degradation
2024-11-26 12:08:01.727908 INFO::Fitting model to feature number 128, PWY_5695__inosine_5_phosphate_degradation_unclassified
2024-11-26 12:08:01.908326 INFO::Fitting model to feature number 129, PWY_5941__glycogen_degradation_II
|+++++++++++++++++++++++ | 45% ~06s 2024-11-26 12:08:01.923588 INFO::Fitting model to feature number 130, PWY_5941__glycogen_degradation_II_unclassified
2024-11-26 12:08:01.92832 INFO::Fitting model to feature number 131, PWY_5973__cis_vaccenate_biosynthesis
2024-11-26 12:08:01.932306 INFO::Fitting model to feature number 132, PWY_5973__cis_vaccenate_biosynthesis_unclassified
|+++++++++++++++++++++++ | 46% ~06s 2024-11-26 12:08:01.947452 INFO::Fitting model to feature number 133, PWY_6121__5_aminoimidazole_ribonucleotide_biosynthesis_I
2024-11-26 12:08:01.951745 INFO::Fitting model to feature number 134, PWY_6121__5_aminoimidazole_ribonucleotide_biosynthesis_I_unclassified
2024-11-26 12:08:01.955658 INFO::Fitting model to feature number 135, PWY_6122__5_aminoimidazole_ribonucleotide_biosynthesis_II
|++++++++++++++++++++++++ | 47% ~06s 2024-11-26 12:08:02.001076 INFO::Fitting model to feature number 136, PWY_6122__5_aminoimidazole_ribonucleotide_biosynthesis_II_unclassified
2024-11-26 12:08:02.00645 INFO::Fitting model to feature number 137, PWY_6123__inosine_5_phosphate_biosynthesis_I
2024-11-26 12:08:02.011129 INFO::Fitting model to feature number 138, PWY_6123__inosine_5_phosphate_biosynthesis_I_unclassified
|++++++++++++++++++++++++ | 48% ~05s 2024-11-26 12:08:02.022978 INFO::Fitting model to feature number 139, PWY_6124__inosine_5_phosphate_biosynthesis_II
2024-11-26 12:08:02.027804 INFO::Fitting model to feature number 140, PWY_6124__inosine_5_phosphate_biosynthesis_II_unclassified
2024-11-26 12:08:02.031894 INFO::Fitting model to feature number 141, PWY_6125__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_II
|+++++++++++++++++++++++++ | 49% ~05s 2024-11-26 12:08:02.223106 INFO::Fitting model to feature number 142, PWY_6125__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_II_unclassified
2024-11-26 12:08:02.26173 INFO::Fitting model to feature number 143, PWY_6126__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_II
2024-11-26 12:08:02.266334 INFO::Fitting model to feature number 144, PWY_6126__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_II_unclassified
|+++++++++++++++++++++++++ | 50% ~05s 2024-11-26 12:08:02.276181 INFO::Fitting model to feature number 145, PWY_6151__S_adenosyl_L_methionine_salvage_I
2024-11-26 12:08:02.280901 INFO::Fitting model to feature number 146, PWY_6151__S_adenosyl_L_methionine_salvage_I_unclassified
2024-11-26 12:08:02.285619 INFO::Fitting model to feature number 147, PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate
|++++++++++++++++++++++++++ | 51% ~05s 2024-11-26 12:08:02.29591 INFO::Fitting model to feature number 148, PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate_unclassified
2024-11-26 12:08:02.30069 INFO::Fitting model to feature number 149, PWY_6277__superpathway_of_5_aminoimidazole_ribonucleotide_biosynthesis
2024-11-26 12:08:02.305259 INFO::Fitting model to feature number 150, PWY_6277__superpathway_of_5_aminoimidazole_ribonucleotide_biosynthesis_unclassified
|+++++++++++++++++++++++++++ | 52% ~05s 2024-11-26 12:08:02.528879 INFO::Fitting model to feature number 151, PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian_
2024-11-26 12:08:02.533743 INFO::Fitting model to feature number 152, PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian__unclassified
2024-11-26 12:08:02.538365 INFO::Fitting model to feature number 153, PWY_6317__D_galactose_degradation_I__Leloir_pathway_
|+++++++++++++++++++++++++++ | 53% ~05s 2024-11-26 12:08:02.548375 INFO::Fitting model to feature number 154, PWY_6317__D_galactose_degradation_I__Leloir_pathway__unclassified
2024-11-26 12:08:02.553877 INFO::Fitting model to feature number 155, PWY_6353__purine_nucleotides_degradation_II__aerobic_
2024-11-26 12:08:02.559344 INFO::Fitting model to feature number 156, PWY_6353__purine_nucleotides_degradation_II__aerobic__unclassified
|++++++++++++++++++++++++++++ | 54% ~05s 2024-11-26 12:08:02.570193 INFO::Fitting model to feature number 157, PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria_
2024-11-26 12:08:02.792077 INFO::Fitting model to feature number 158, PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria__unclassified
2024-11-26 12:08:02.796759 INFO::Fitting model to feature number 159, PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing_
|++++++++++++++++++++++++++++ | 55% ~05s 2024-11-26 12:08:02.805594 INFO::Fitting model to feature number 160, PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing__unclassified
2024-11-26 12:08:02.810372 INFO::Fitting model to feature number 161, PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:02.814983 INFO::Fitting model to feature number 162, PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing__unclassified
|+++++++++++++++++++++++++++++ | 56% ~05s 2024-11-26 12:08:02.826264 INFO::Fitting model to feature number 163, PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation
2024-11-26 12:08:02.831453 INFO::Fitting model to feature number 164, PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation_unclassified
2024-11-26 12:08:02.836164 INFO::Fitting model to feature number 165, PWY_6527__stachyose_degradation
|+++++++++++++++++++++++++++++ | 57% ~05s 2024-11-26 12:08:03.07948 INFO::Fitting model to feature number 166, PWY_6527__stachyose_degradation_unclassified
2024-11-26 12:08:03.084669 INFO::Fitting model to feature number 167, PWY_6588__pyruvate_fermentation_to_acetone
2024-11-26 12:08:03.089336 INFO::Fitting model to feature number 168, PWY_6588__pyruvate_fermentation_to_acetone_unclassified
|++++++++++++++++++++++++++++++ | 58% ~04s 2024-11-26 12:08:03.102043 INFO::Fitting model to feature number 169, PWY_6590__superpathway_of_Clostridium_acetobutylicum_acidogenic_fermentation
2024-11-26 12:08:03.110771 INFO::Fitting model to feature number 170, PWY_6590__superpathway_of_Clostridium_acetobutylicum_acidogenic_fermentation_unclassified
2024-11-26 12:08:03.119053 INFO::Fitting model to feature number 171, PWY_6606__guanosine_nucleotides_degradation_II
|++++++++++++++++++++++++++++++ | 59% ~04s 2024-11-26 12:08:03.36491 INFO::Fitting model to feature number 172, PWY_6606__guanosine_nucleotides_degradation_II_unclassified
2024-11-26 12:08:03.369779 INFO::Fitting model to feature number 173, PWY_6608__guanosine_nucleotides_degradation_III
2024-11-26 12:08:03.374466 INFO::Fitting model to feature number 174, PWY_6608__guanosine_nucleotides_degradation_III_unclassified
|+++++++++++++++++++++++++++++++ | 60% ~04s 2024-11-26 12:08:03.385878 INFO::Fitting model to feature number 175, PWY_6609__adenine_and_adenosine_salvage_III
2024-11-26 12:08:03.39129 INFO::Fitting model to feature number 176, PWY_6609__adenine_and_adenosine_salvage_III_unclassified
2024-11-26 12:08:03.399088 INFO::Fitting model to feature number 177, PWY_6628__superpathway_of_L_phenylalanine_biosynthesis
|+++++++++++++++++++++++++++++++ | 61% ~04s 2024-11-26 12:08:03.639093 INFO::Fitting model to feature number 178, PWY_6628__superpathway_of_L_phenylalanine_biosynthesis_unclassified
2024-11-26 12:08:03.644066 INFO::Fitting model to feature number 179, PWY_6630__superpathway_of_L_tyrosine_biosynthesis
2024-11-26 12:08:03.648675 INFO::Fitting model to feature number 180, PWY_6630__superpathway_of_L_tyrosine_biosynthesis_unclassified
|++++++++++++++++++++++++++++++++ | 62% ~04s 2024-11-26 12:08:03.662955 INFO::Fitting model to feature number 181, PWY_6700__queuosine_biosynthesis_I__de_novo_
2024-11-26 12:08:03.670154 INFO::Fitting model to feature number 182, PWY_6700__queuosine_biosynthesis_I__de_novo__unclassified
2024-11-26 12:08:03.678922 INFO::Fitting model to feature number 183, PWY_6703__preQ0_biosynthesis
|++++++++++++++++++++++++++++++++ | 64% ~04s 2024-11-26 12:08:03.927842 INFO::Fitting model to feature number 184, PWY_6703__preQ0_biosynthesis_unclassified
2024-11-26 12:08:03.932737 INFO::Fitting model to feature number 185, PWY_6731__starch_degradation_III
2024-11-26 12:08:03.937506 INFO::Fitting model to feature number 186, PWY_6731__starch_degradation_III_unclassified
|+++++++++++++++++++++++++++++++++ | 65% ~04s 2024-11-26 12:08:03.947768 INFO::Fitting model to feature number 187, PWY_6897__thiamine_diphosphate_salvage_II
2024-11-26 12:08:03.952492 INFO::Fitting model to feature number 188, PWY_6897__thiamine_diphosphate_salvage_II_unclassified
2024-11-26 12:08:03.957362 INFO::Fitting model to feature number 189, PWY_6936__seleno_amino_acid_biosynthesis__plants_
|+++++++++++++++++++++++++++++++++ | 66% ~04s 2024-11-26 12:08:04.169617 INFO::Fitting model to feature number 190, PWY_6936__seleno_amino_acid_biosynthesis__plants__unclassified
2024-11-26 12:08:04.205788 INFO::Fitting model to feature number 191, PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase_
2024-11-26 12:08:04.210389 INFO::Fitting model to feature number 192, PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase__unclassified
|++++++++++++++++++++++++++++++++++ | 67% ~04s 2024-11-26 12:08:04.220993 INFO::Fitting model to feature number 193, PWY_702__L_methionine_biosynthesis_II
2024-11-26 12:08:04.225651 INFO::Fitting model to feature number 194, PWY_702__L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:04.232761 INFO::Fitting model to feature number 195, PWY_7111__pyruvate_fermentation_to_isobutanol__engineered_
|++++++++++++++++++++++++++++++++++ | 68% ~03s 2024-11-26 12:08:04.244958 INFO::Fitting model to feature number 196, PWY_7111__pyruvate_fermentation_to_isobutanol__engineered__unclassified
2024-11-26 12:08:04.48693 INFO::Fitting model to feature number 197, PWY_7197__pyrimidine_deoxyribonucleotide_phosphorylation
2024-11-26 12:08:04.49189 INFO::Fitting model to feature number 198, PWY_7197__pyrimidine_deoxyribonucleotide_phosphorylation_unclassified
|+++++++++++++++++++++++++++++++++++ | 69% ~03s 2024-11-26 12:08:04.510511 INFO::Fitting model to feature number 199, PWY_7199__pyrimidine_deoxyribonucleosides_salvage
2024-11-26 12:08:04.514894 INFO::Fitting model to feature number 200, PWY_7199__pyrimidine_deoxyribonucleosides_salvage_unclassified
2024-11-26 12:08:04.518898 INFO::Fitting model to feature number 201, PWY_7208__superpathway_of_pyrimidine_nucleobases_salvage
|+++++++++++++++++++++++++++++++++++ | 70% ~03s 2024-11-26 12:08:04.528012 INFO::Fitting model to feature number 202, PWY_7208__superpathway_of_pyrimidine_nucleobases_salvage_unclassified
2024-11-26 12:08:04.532629 INFO::Fitting model to feature number 203, PWY_7220__adenosine_deoxyribonucleotides_de_novo_biosynthesis_II
2024-11-26 12:08:04.766172 INFO::Fitting model to feature number 204, PWY_7220__adenosine_deoxyribonucleotides_de_novo_biosynthesis_II_unclassified
|++++++++++++++++++++++++++++++++++++ | 71% ~03s 2024-11-26 12:08:04.775263 INFO::Fitting model to feature number 205, PWY_7221__guanosine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:04.779232 INFO::Fitting model to feature number 206, PWY_7221__guanosine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:04.783082 INFO::Fitting model to feature number 207, PWY_7222__guanosine_deoxyribonucleotides_de_novo_biosynthesis_II
|++++++++++++++++++++++++++++++++++++ | 72% ~03s 2024-11-26 12:08:04.791393 INFO::Fitting model to feature number 208, PWY_7222__guanosine_deoxyribonucleotides_de_novo_biosynthesis_II_unclassified
2024-11-26 12:08:04.796586 INFO::Fitting model to feature number 209, PWY_7228__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:04.800787 INFO::Fitting model to feature number 210, PWY_7228__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_I_unclassified
|+++++++++++++++++++++++++++++++++++++ | 73% ~03s 2024-11-26 12:08:04.814653 INFO::Fitting model to feature number 211, PWY_7229__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:05.053423 INFO::Fitting model to feature number 212, PWY_7229__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_I_unclassified
2024-11-26 12:08:05.057325 INFO::Fitting model to feature number 213, PWY_7238__sucrose_biosynthesis_II
|+++++++++++++++++++++++++++++++++++++ | 74% ~03s 2024-11-26 12:08:05.066315 INFO::Fitting model to feature number 214, PWY_7238__sucrose_biosynthesis_II_unclassified
2024-11-26 12:08:05.070384 INFO::Fitting model to feature number 215, PWY_7242__D_fructuronate_degradation
2024-11-26 12:08:05.074186 INFO::Fitting model to feature number 216, PWY_7242__D_fructuronate_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++ | 75% ~03s 2024-11-26 12:08:05.085477 INFO::Fitting model to feature number 217, PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II
2024-11-26 12:08:05.090381 INFO::Fitting model to feature number 218, PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:05.094239 INFO::Fitting model to feature number 219, PWY_7323__superpathway_of_GDP_mannose_derived_O_antigen_building_blocks_biosynthesis
|+++++++++++++++++++++++++++++++++++++++ | 76% ~03s 2024-11-26 12:08:05.316321 INFO::Fitting model to feature number 220, PWY_7323__superpathway_of_GDP_mannose_derived_O_antigen_building_blocks_biosynthesis_unclassified
2024-11-26 12:08:05.320533 INFO::Fitting model to feature number 221, PWY_7328__superpathway_of_UDP_glucose_derived_O_antigen_building_blocks_biosynthesis
2024-11-26 12:08:05.324597 INFO::Fitting model to feature number 222, PWY_7328__superpathway_of_UDP_glucose_derived_O_antigen_building_blocks_biosynthesis_unclassified
|+++++++++++++++++++++++++++++++++++++++ | 77% ~02s 2024-11-26 12:08:05.335804 INFO::Fitting model to feature number 223, PWY_7357__thiamine_phosphate_formation_from_pyrithiamine_and_oxythiamine__yeast_
2024-11-26 12:08:05.340461 INFO::Fitting model to feature number 224, PWY_7357__thiamine_phosphate_formation_from_pyrithiamine_and_oxythiamine__yeast__unclassified
2024-11-26 12:08:05.344784 INFO::Fitting model to feature number 225, PWY_7400__L_arginine_biosynthesis_IV__archaebacteria_
|++++++++++++++++++++++++++++++++++++++++ | 78% ~02s 2024-11-26 12:08:05.355818 INFO::Fitting model to feature number 226, PWY_7400__L_arginine_biosynthesis_IV__archaebacteria__unclassified
2024-11-26 12:08:05.359876 INFO::Fitting model to feature number 227, PWY_7456___beta___1_4__mannan_degradation
2024-11-26 12:08:05.363614 INFO::Fitting model to feature number 228, PWY_7456___beta___1_4__mannan_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++++ | 79% ~02s 2024-11-26 12:08:05.587478 INFO::Fitting model to feature number 229, PWY_7560__methylerythritol_phosphate_pathway_II
2024-11-26 12:08:05.59149 INFO::Fitting model to feature number 230, PWY_7560__methylerythritol_phosphate_pathway_II_unclassified
2024-11-26 12:08:05.595259 INFO::Fitting model to feature number 231, PWY_7663__gondoate_biosynthesis__anaerobic_
|+++++++++++++++++++++++++++++++++++++++++ | 80% ~02s 2024-11-26 12:08:05.605372 INFO::Fitting model to feature number 232, PWY_7663__gondoate_biosynthesis__anaerobic__unclassified
2024-11-26 12:08:05.611471 INFO::Fitting model to feature number 233, PWY_7790__UMP_biosynthesis_II
2024-11-26 12:08:05.616127 INFO::Fitting model to feature number 234, PWY_7790__UMP_biosynthesis_II_unclassified
|+++++++++++++++++++++++++++++++++++++++++ | 81% ~02s 2024-11-26 12:08:05.628386 INFO::Fitting model to feature number 235, PWY_7791__UMP_biosynthesis_III
2024-11-26 12:08:05.857078 INFO::Fitting model to feature number 236, PWY_7791__UMP_biosynthesis_III_unclassified
2024-11-26 12:08:05.861252 INFO::Fitting model to feature number 237, PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic_
|++++++++++++++++++++++++++++++++++++++++++ | 82% ~02s 2024-11-26 12:08:05.870685 INFO::Fitting model to feature number 238, PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic__unclassified
2024-11-26 12:08:05.874582 INFO::Fitting model to feature number 239, PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing_
2024-11-26 12:08:05.878401 INFO::Fitting model to feature number 240, PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing__unclassified
|++++++++++++++++++++++++++++++++++++++++++ | 83% ~02s 2024-11-26 12:08:05.892764 INFO::Fitting model to feature number 241, PWY_7977__L_methionine_biosynthesis_IV
2024-11-26 12:08:05.897039 INFO::Fitting model to feature number 242, PWY_7977__L_methionine_biosynthesis_IV_unclassified
2024-11-26 12:08:05.901092 INFO::Fitting model to feature number 243, PWY_8178__pentose_phosphate_pathway__non_oxidative_branch__II
|+++++++++++++++++++++++++++++++++++++++++++ | 84% ~02s 2024-11-26 12:08:06.123927 INFO::Fitting model to feature number 244, PWY_8178__pentose_phosphate_pathway__non_oxidative_branch__II_unclassified
2024-11-26 12:08:06.130421 INFO::Fitting model to feature number 245, PWY_841__superpathway_of_purine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:06.134205 INFO::Fitting model to feature number 246, PWY_841__superpathway_of_purine_nucleotides_de_novo_biosynthesis_I_unclassified
|+++++++++++++++++++++++++++++++++++++++++++ | 85% ~02s 2024-11-26 12:08:06.144728 INFO::Fitting model to feature number 247, PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine_
2024-11-26 12:08:06.148782 INFO::Fitting model to feature number 248, PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine__unclassified
2024-11-26 12:08:06.152719 INFO::Fitting model to feature number 249, PWY0_1296__purine_ribonucleosides_degradation
|++++++++++++++++++++++++++++++++++++++++++++ | 86% ~01s 2024-11-26 12:08:06.352876 INFO::Fitting model to feature number 250, PWY0_1296__purine_ribonucleosides_degradation_unclassified
2024-11-26 12:08:06.388484 INFO::Fitting model to feature number 251, PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation
2024-11-26 12:08:06.392504 INFO::Fitting model to feature number 252, PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++++++++ | 88% ~01s 2024-11-26 12:08:06.401212 INFO::Fitting model to feature number 253, PWY0_1319__CDP_diacylglycerol_biosynthesis_II
2024-11-26 12:08:06.406519 INFO::Fitting model to feature number 254, PWY0_1319__CDP_diacylglycerol_biosynthesis_II_unclassified
2024-11-26 12:08:06.410365 INFO::Fitting model to feature number 255, PWY0_1477__ethanolamine_utilization
|+++++++++++++++++++++++++++++++++++++++++++++ | 89% ~01s 2024-11-26 12:08:06.419642 INFO::Fitting model to feature number 256, PWY0_1477__ethanolamine_utilization_unclassified
2024-11-26 12:08:06.424476 INFO::Fitting model to feature number 257, PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing_
2024-11-26 12:08:06.428736 INFO::Fitting model to feature number 258, PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing__unclassified
|+++++++++++++++++++++++++++++++++++++++++++++ | 90% ~01s 2024-11-26 12:08:06.665736 INFO::Fitting model to feature number 259, PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:06.670548 INFO::Fitting model to feature number 260, PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:06.674761 INFO::Fitting model to feature number 261, PWY1ZNC_1__assimilatory_sulfate_reduction_IV
|++++++++++++++++++++++++++++++++++++++++++++++ | 91% ~01s 2024-11-26 12:08:06.6834 INFO::Fitting model to feature number 262, PWY1ZNC_1__assimilatory_sulfate_reduction_IV_unclassified
2024-11-26 12:08:06.687405 INFO::Fitting model to feature number 263, PWY4LZ_257__superpathway_of_fermentation__Chlamydomonas_reinhardtii_
2024-11-26 12:08:06.691329 INFO::Fitting model to feature number 264, PWY66_429__fatty_acid_biosynthesis_initiation__mitochondria_
|++++++++++++++++++++++++++++++++++++++++++++++ | 92% ~01s 2024-11-26 12:08:06.70159 INFO::Fitting model to feature number 265, PWY66_429__fatty_acid_biosynthesis_initiation__mitochondria__unclassified
2024-11-26 12:08:06.706152 INFO::Fitting model to feature number 266, PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate_
2024-11-26 12:08:06.710224 INFO::Fitting model to feature number 267, PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate__unclassified
|+++++++++++++++++++++++++++++++++++++++++++++++ | 93% ~01s 2024-11-26 12:08:06.947542 INFO::Fitting model to feature number 268, RHAMCAT_PWY__L_rhamnose_degradation_I
2024-11-26 12:08:06.952237 INFO::Fitting model to feature number 269, RHAMCAT_PWY__L_rhamnose_degradation_I_unclassified
2024-11-26 12:08:06.956534 INFO::Fitting model to feature number 270, RIBOSYN2_PWY__flavin_biosynthesis_I__bacteria_and_plants_
|+++++++++++++++++++++++++++++++++++++++++++++++ | 94% ~01s 2024-11-26 12:08:06.965843 INFO::Fitting model to feature number 271, RIBOSYN2_PWY__flavin_biosynthesis_I__bacteria_and_plants__unclassified
2024-11-26 12:08:06.970065 INFO::Fitting model to feature number 272, SALVADEHYPOX_PWY__adenosine_nucleotides_degradation_II
2024-11-26 12:08:06.974284 INFO::Fitting model to feature number 273, SALVADEHYPOX_PWY__adenosine_nucleotides_degradation_II_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++ | 95% ~01s 2024-11-26 12:08:06.985283 INFO::Fitting model to feature number 274, SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I
2024-11-26 12:08:06.990727 INFO::Fitting model to feature number 275, SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I_unclassified
2024-11-26 12:08:07.251334 INFO::Fitting model to feature number 276, SO4ASSIM_PWY__assimilatory_sulfate_reduction_I
|++++++++++++++++++++++++++++++++++++++++++++++++ | 96% ~00s 2024-11-26 12:08:07.260711 INFO::Fitting model to feature number 277, SO4ASSIM_PWY__assimilatory_sulfate_reduction_I_unclassified
2024-11-26 12:08:07.265917 INFO::Fitting model to feature number 278, SULFATE_CYS_PWY__superpathway_of_sulfate_assimilation_and_cysteine_biosynthesis
2024-11-26 12:08:07.26982 INFO::Fitting model to feature number 279, SULFATE_CYS_PWY__superpathway_of_sulfate_assimilation_and_cysteine_biosynthesis_unclassified
|+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~00s 2024-11-26 12:08:07.281886 INFO::Fitting model to feature number 280, THRESYN_PWY__superpathway_of_L_threonine_biosynthesis
2024-11-26 12:08:07.287638 INFO::Fitting model to feature number 281, THRESYN_PWY__superpathway_of_L_threonine_biosynthesis_unclassified
2024-11-26 12:08:07.291901 INFO::Fitting model to feature number 282, TRNA_CHARGING_PWY__tRNA_charging
|+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~00s 2024-11-26 12:08:07.494793 INFO::Fitting model to feature number 283, TRNA_CHARGING_PWY__tRNA_charging_unclassified
2024-11-26 12:08:07.533406 INFO::Fitting model to feature number 284, UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I
2024-11-26 12:08:07.537318 INFO::Fitting model to feature number 285, UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s 2024-11-26 12:08:07.547795 INFO::Fitting model to feature number 286, VALSYN_PWY__L_valine_biosynthesis
2024-11-26 12:08:07.551982 INFO::Fitting model to feature number 287, VALSYN_PWY__L_valine_biosynthesis_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=11s
2024-11-26 12:08:07.577421 INFO::Performing tests against medians
2024-11-26 12:08:12.885766 INFO::Counting total values for each feature
2024-11-26 12:08:12.924843 INFO::Running the logistic model component
| | 0 % ~calculating 2024-11-26 12:08:12.939488 INFO::Fitting model to feature number 1, X1CMET2_PWY__folate_transformations_III__E__coli_
2024-11-26 12:08:12.943222 INFO::Fitting model to feature number 2, X1CMET2_PWY__folate_transformations_III__E__coli__unclassified
2024-11-26 12:08:12.94549 INFO::Fitting model to feature number 3, ANAEROFRUCAT_PWY__homolactic_fermentation
|+ | 1 % ~02s 2024-11-26 12:08:12.952916 INFO::Fitting model to feature number 4, ANAEROFRUCAT_PWY__homolactic_fermentation_unclassified
2024-11-26 12:08:12.955779 INFO::Fitting model to feature number 5, ANAGLYCOLYSIS_PWY__glycolysis_III__from_glucose_
2024-11-26 12:08:12.95866 INFO::Fitting model to feature number 6, ANAGLYCOLYSIS_PWY__glycolysis_III__from_glucose__unclassified
|++ | 2 % ~01s 2024-11-26 12:08:13.576345 INFO::Fitting model to feature number 7, ARGSYN_PWY__L_arginine_biosynthesis_I__via_L_ornithine_
2024-11-26 12:08:14.505307 INFO::Fitting model to feature number 8, ARGSYN_PWY__L_arginine_biosynthesis_I__via_L_ornithine__unclassified
2024-11-26 12:08:14.507757 INFO::Fitting model to feature number 9, ARGSYNBSUB_PWY__L_arginine_biosynthesis_II__acetyl_cycle_
|++ | 3 % ~49s 2024-11-26 12:08:14.517373 INFO::Fitting model to feature number 10, ARGSYNBSUB_PWY__L_arginine_biosynthesis_II__acetyl_cycle__unclassified
2024-11-26 12:08:14.519771 INFO::Fitting model to feature number 11, ARO_PWY__chorismate_biosynthesis_I
2024-11-26 12:08:14.521856 INFO::Fitting model to feature number 12, ARO_PWY__chorismate_biosynthesis_I_unclassified
|+++ | 4 % ~37s 2024-11-26 12:08:14.52914 INFO::Fitting model to feature number 13, ASPASN_PWY__superpathway_of_L_aspartate_and_L_asparagine_biosynthesis
2024-11-26 12:08:14.531648 INFO::Fitting model to feature number 14, ASPASN_PWY__superpathway_of_L_aspartate_and_L_asparagine_biosynthesis_unclassified
2024-11-26 12:08:14.533861 INFO::Fitting model to feature number 15, BRANCHED_CHAIN_AA_SYN_PWY__superpathway_of_branched_chain_amino_acid_biosynthesis
|+++ | 5 % ~29s 2024-11-26 12:08:14.541231 INFO::Fitting model to feature number 16, BRANCHED_CHAIN_AA_SYN_PWY__superpathway_of_branched_chain_amino_acid_biosynthesis_unclassified
2024-11-26 12:08:14.543654 INFO::Fitting model to feature number 17, CALVIN_PWY__Calvin_Benson_Bassham_cycle
2024-11-26 12:08:14.545986 INFO::Fitting model to feature number 18, CALVIN_PWY__Calvin_Benson_Bassham_cycle_unclassified
|++++ | 6 % ~24s 2024-11-26 12:08:14.553819 INFO::Fitting model to feature number 19, CENTFERM_PWY__pyruvate_fermentation_to_butanoate
2024-11-26 12:08:14.556191 INFO::Fitting model to feature number 20, CENTFERM_PWY__pyruvate_fermentation_to_butanoate_unclassified
2024-11-26 12:08:14.558339 INFO::Fitting model to feature number 21, COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals_
|++++ | 7 % ~21s 2024-11-26 12:08:14.567269 INFO::Fitting model to feature number 22, COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals__unclassified
2024-11-26 12:08:14.569578 INFO::Fitting model to feature number 23, COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic_
2024-11-26 12:08:14.571936 INFO::Fitting model to feature number 24, COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic__unclassified
|+++++ | 8 % ~18s 2024-11-26 12:08:14.581866 INFO::Fitting model to feature number 25, COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I
2024-11-26 12:08:14.585127 INFO::Fitting model to feature number 26, COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I_unclassified
2024-11-26 12:08:14.587439 INFO::Fitting model to feature number 27, COLANSYN_PWY__colanic_acid_building_blocks_biosynthesis
|+++++ | 9 % ~16s 2024-11-26 12:08:14.596139 INFO::Fitting model to feature number 28, COLANSYN_PWY__colanic_acid_building_blocks_biosynthesis_unclassified
2024-11-26 12:08:14.598622 INFO::Fitting model to feature number 29, COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis
2024-11-26 12:08:14.600902 INFO::Fitting model to feature number 30, COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis_unclassified
|++++++ | 10% ~14s 2024-11-26 12:08:14.609185 INFO::Fitting model to feature number 31, DAPLYSINESYN_PWY__L_lysine_biosynthesis_I
2024-11-26 12:08:14.612015 INFO::Fitting model to feature number 32, DAPLYSINESYN_PWY__L_lysine_biosynthesis_I_unclassified
2024-11-26 12:08:14.614616 INFO::Fitting model to feature number 33, DARABCATK12_PWY__D_arabinose_degradation_I
|++++++ | 11% ~13s 2024-11-26 12:08:14.623952 INFO::Fitting model to feature number 34, DARABCATK12_PWY__D_arabinose_degradation_I_unclassified
2024-11-26 12:08:14.626768 INFO::Fitting model to feature number 35, DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis
2024-11-26 12:08:14.629248 INFO::Fitting model to feature number 36, DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis_unclassified
|+++++++ | 12% ~12s 2024-11-26 12:08:14.640116 INFO::Fitting model to feature number 37, FERMENTATION_PWY__mixed_acid_fermentation
2024-11-26 12:08:14.643002 INFO::Fitting model to feature number 38, FERMENTATION_PWY__mixed_acid_fermentation_unclassified
2024-11-26 12:08:14.651173 INFO::Fitting model to feature number 39, FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation
|+++++++ | 14% ~11s 2024-11-26 12:08:14.658731 INFO::Fitting model to feature number 40, FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation_unclassified
2024-11-26 12:08:14.661383 INFO::Fitting model to feature number 41, FUCCAT_PWY__fucose_degradation
2024-11-26 12:08:14.664058 INFO::Fitting model to feature number 42, FUCCAT_PWY__fucose_degradation_unclassified
|++++++++ | 15% ~10s 2024-11-26 12:08:14.670821 INFO::Fitting model to feature number 43, GALACT_GLUCUROCAT_PWY__superpathway_of_hexuronide_and_hexuronate_degradation
2024-11-26 12:08:14.673252 INFO::Fitting model to feature number 44, GALACT_GLUCUROCAT_PWY__superpathway_of_hexuronide_and_hexuronate_degradation_unclassified
2024-11-26 12:08:14.67669 INFO::Fitting model to feature number 45, GALACTUROCAT_PWY__D_galacturonate_degradation_I
|++++++++ | 16% ~09s 2024-11-26 12:08:14.68611 INFO::Fitting model to feature number 46, GALACTUROCAT_PWY__D_galacturonate_degradation_I_unclassified
2024-11-26 12:08:14.688437 INFO::Fitting model to feature number 47, GLCMANNANAUT_PWY__superpathway_of_N_acetylglucosamine__N_acetylmannosamine_and_N_acetylneuraminate_degradation
2024-11-26 12:08:14.690594 INFO::Fitting model to feature number 48, GLCMANNANAUT_PWY__superpathway_of_N_acetylglucosamine__N_acetylmannosamine_and_N_acetylneuraminate_degradation_unclassified
|+++++++++ | 17% ~09s 2024-11-26 12:08:14.702799 INFO::Fitting model to feature number 49, GLUCONEO_PWY__gluconeogenesis_I
2024-11-26 12:08:16.594789 INFO::Fitting model to feature number 50, GLUCONEO_PWY__gluconeogenesis_I_unclassified
2024-11-26 12:08:17.166549 INFO::Fitting model to feature number 51, GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation
|+++++++++ | 18% ~20s 2024-11-26 12:08:17.175299 INFO::Fitting model to feature number 52, GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation_unclassified
2024-11-26 12:08:17.177587 INFO::Fitting model to feature number 53, GLUTORN_PWY__L_ornithine_biosynthesis_I
2024-11-26 12:08:17.179824 INFO::Fitting model to feature number 54, GLUTORN_PWY__L_ornithine_biosynthesis_I_unclassified
|++++++++++ | 19% ~18s 2024-11-26 12:08:17.186811 INFO::Fitting model to feature number 55, GLYCOGENSYNTH_PWY__glycogen_biosynthesis_I__from_ADP_D_Glucose_
2024-11-26 12:08:17.189121 INFO::Fitting model to feature number 56, GLYCOGENSYNTH_PWY__glycogen_biosynthesis_I__from_ADP_D_Glucose__unclassified
2024-11-26 12:08:17.191329 INFO::Fitting model to feature number 57, GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate_
|++++++++++ | 20% ~17s 2024-11-26 12:08:17.19931 INFO::Fitting model to feature number 58, GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate__unclassified
2024-11-26 12:08:17.201748 INFO::Fitting model to feature number 59, HISTSYN_PWY__L_histidine_biosynthesis
2024-11-26 12:08:17.20486 INFO::Fitting model to feature number 60, HISTSYN_PWY__L_histidine_biosynthesis_unclassified
|+++++++++++ | 21% ~16s 2024-11-26 12:08:17.214351 INFO::Fitting model to feature number 61, HOMOSER_METSYN_PWY__L_methionine_biosynthesis_I
2024-11-26 12:08:18.749784 INFO::Fitting model to feature number 62, HOMOSER_METSYN_PWY__L_methionine_biosynthesis_I_unclassified
2024-11-26 12:08:18.753931 INFO::Fitting model to feature number 63, HSERMETANA_PWY__L_methionine_biosynthesis_III
|+++++++++++ | 22% ~21s 2024-11-26 12:08:18.768447 INFO::Fitting model to feature number 64, HSERMETANA_PWY__L_methionine_biosynthesis_III_unclassified
2024-11-26 12:08:18.773133 INFO::Fitting model to feature number 65, ILEUSYN_PWY__L_isoleucine_biosynthesis_I__from_threonine_
2024-11-26 12:08:18.776358 INFO::Fitting model to feature number 66, ILEUSYN_PWY__L_isoleucine_biosynthesis_I__from_threonine__unclassified
|++++++++++++ | 23% ~20s 2024-11-26 12:08:18.791387 INFO::Fitting model to feature number 67, MET_SAM_PWY__superpathway_of_S_adenosyl_L_methionine_biosynthesis
2024-11-26 12:08:18.793776 INFO::Fitting model to feature number 68, MET_SAM_PWY__superpathway_of_S_adenosyl_L_methionine_biosynthesis_unclassified
2024-11-26 12:08:19.009355 INFO::Fitting model to feature number 69, METH_ACETATE_PWY__methanogenesis_from_acetate
|++++++++++++ | 24% ~19s 2024-11-26 12:08:19.025484 INFO::Fitting model to feature number 70, METH_ACETATE_PWY__methanogenesis_from_acetate_unclassified
2024-11-26 12:08:19.028498 INFO::Fitting model to feature number 71, METSYN_PWY__superpathway_of_L_homoserine_and_L_methionine_biosynthesis
2024-11-26 12:08:19.03058 INFO::Fitting model to feature number 72, METSYN_PWY__superpathway_of_L_homoserine_and_L_methionine_biosynthesis_unclassified
|+++++++++++++ | 25% ~18s 2024-11-26 12:08:19.038752 INFO::Fitting model to feature number 73, NONMEVIPP_PWY__methylerythritol_phosphate_pathway_I
2024-11-26 12:08:19.041189 INFO::Fitting model to feature number 74, NONMEVIPP_PWY__methylerythritol_phosphate_pathway_I_unclassified
2024-11-26 12:08:19.043411 INFO::Fitting model to feature number 75, NONOXIPENT_PWY__pentose_phosphate_pathway__non_oxidative_branch__I
|++++++++++++++ | 26% ~17s 2024-11-26 12:08:19.052496 INFO::Fitting model to feature number 76, NONOXIPENT_PWY__pentose_phosphate_pathway__non_oxidative_branch__I_unclassified
2024-11-26 12:08:19.055021 INFO::Fitting model to feature number 77, OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli_
2024-11-26 12:08:19.057271 INFO::Fitting model to feature number 78, OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli__unclassified
|++++++++++++++ | 27% ~17s 2024-11-26 12:08:19.282067 INFO::Fitting model to feature number 79, P41_PWY__pyruvate_fermentation_to_acetate_and__S__lactate_I
2024-11-26 12:08:19.285333 INFO::Fitting model to feature number 80, P41_PWY__pyruvate_fermentation_to_acetate_and__S__lactate_I_unclassified
2024-11-26 12:08:19.287511 INFO::Fitting model to feature number 81, P461_PWY__hexitol_fermentation_to_lactate__formate__ethanol_and_acetate
|+++++++++++++++ | 28% ~16s 2024-11-26 12:08:19.300451 INFO::Fitting model to feature number 82, PANTO_PWY__phosphopantothenate_biosynthesis_I
2024-11-26 12:08:19.302783 INFO::Fitting model to feature number 83, PANTO_PWY__phosphopantothenate_biosynthesis_I_unclassified
2024-11-26 12:08:19.304917 INFO::Fitting model to feature number 84, PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria_
|+++++++++++++++ | 29% ~15s 2024-11-26 12:08:19.31496 INFO::Fitting model to feature number 85, PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria__unclassified
2024-11-26 12:08:19.317536 INFO::Fitting model to feature number 86, PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:19.534206 INFO::Fitting model to feature number 87, PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing__unclassified
|++++++++++++++++ | 30% ~15s 2024-11-26 12:08:19.542336 INFO::Fitting model to feature number 88, PPGPPMET_PWY__ppGpp_metabolism
2024-11-26 12:08:19.545031 INFO::Fitting model to feature number 89, PPGPPMET_PWY__ppGpp_metabolism_unclassified
2024-11-26 12:08:19.547307 INFO::Fitting model to feature number 90, PWY_1042__glycolysis_IV
|++++++++++++++++ | 31% ~15s 2024-11-26 12:08:19.555445 INFO::Fitting model to feature number 91, PWY_1042__glycolysis_IV_unclassified
2024-11-26 12:08:19.557793 INFO::Fitting model to feature number 92, PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis
2024-11-26 12:08:19.560292 INFO::Fitting model to feature number 93, PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis_unclassified
|+++++++++++++++++ | 32% ~14s 2024-11-26 12:08:19.570152 INFO::Fitting model to feature number 94, PWY_2942__L_lysine_biosynthesis_III
2024-11-26 12:08:19.573962 INFO::Fitting model to feature number 95, PWY_2942__L_lysine_biosynthesis_III_unclassified
2024-11-26 12:08:19.576461 INFO::Fitting model to feature number 96, PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I
|+++++++++++++++++ | 33% ~13s 2024-11-26 12:08:19.584694 INFO::Fitting model to feature number 97, PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I_unclassified
2024-11-26 12:08:19.828352 INFO::Fitting model to feature number 98, PWY_3841__folate_transformations_II__plants_
2024-11-26 12:08:19.830561 INFO::Fitting model to feature number 99, PWY_3841__folate_transformations_II__plants__unclassified
|++++++++++++++++++ | 34% ~13s 2024-11-26 12:08:19.836792 INFO::Fitting model to feature number 100, PWY_5097__L_lysine_biosynthesis_VI
2024-11-26 12:08:19.839033 INFO::Fitting model to feature number 101, PWY_5097__L_lysine_biosynthesis_VI_unclassified
2024-11-26 12:08:19.844361 INFO::Fitting model to feature number 102, PWY_5100__pyruvate_fermentation_to_acetate_and_lactate_II
|++++++++++++++++++ | 35% ~13s 2024-11-26 12:08:19.852051 INFO::Fitting model to feature number 103, PWY_5100__pyruvate_fermentation_to_acetate_and_lactate_II_unclassified
2024-11-26 12:08:19.854811 INFO::Fitting model to feature number 104, PWY_5103__L_isoleucine_biosynthesis_III
2024-11-26 12:08:19.857104 INFO::Fitting model to feature number 105, PWY_5103__L_isoleucine_biosynthesis_III_unclassified
|+++++++++++++++++++ | 36% ~12s 2024-11-26 12:08:19.864421 INFO::Fitting model to feature number 106, PWY_5130__2_oxobutanoate_degradation_I
2024-11-26 12:08:19.867604 INFO::Fitting model to feature number 107, PWY_5130__2_oxobutanoate_degradation_I_unclassified
2024-11-26 12:08:19.870185 INFO::Fitting model to feature number 108, PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline_
|+++++++++++++++++++ | 38% ~12s 2024-11-26 12:08:19.876922 INFO::Fitting model to feature number 109, PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline__unclassified
2024-11-26 12:08:20.093769 INFO::Fitting model to feature number 110, PWY_5188__tetrapyrrole_biosynthesis_I__from_glutamate_
2024-11-26 12:08:20.09775 INFO::Fitting model to feature number 111, PWY_5188__tetrapyrrole_biosynthesis_I__from_glutamate__unclassified
|++++++++++++++++++++ | 39% ~11s 2024-11-26 12:08:20.108461 INFO::Fitting model to feature number 112, PWY_5189__tetrapyrrole_biosynthesis_II__from_glycine_
2024-11-26 12:08:20.113041 INFO::Fitting model to feature number 113, PWY_5345__superpathway_of_L_methionine_biosynthesis__by_sulfhydrylation_
2024-11-26 12:08:20.115515 INFO::Fitting model to feature number 114, PWY_5345__superpathway_of_L_methionine_biosynthesis__by_sulfhydrylation__unclassified
|++++++++++++++++++++ | 40% ~11s 2024-11-26 12:08:20.125443 INFO::Fitting model to feature number 115, PWY_5347__superpathway_of_L_methionine_biosynthesis__transsulfuration_
2024-11-26 12:08:20.128461 INFO::Fitting model to feature number 116, PWY_5347__superpathway_of_L_methionine_biosynthesis__transsulfuration__unclassified
2024-11-26 12:08:20.131137 INFO::Fitting model to feature number 117, PWY_5484__glycolysis_II__from_fructose_6_phosphate_
|+++++++++++++++++++++ | 41% ~11s 2024-11-26 12:08:20.139435 INFO::Fitting model to feature number 118, PWY_5484__glycolysis_II__from_fructose_6_phosphate__unclassified
2024-11-26 12:08:20.141732 INFO::Fitting model to feature number 119, PWY_5505__L_glutamate_and_L_glutamine_biosynthesis
2024-11-26 12:08:20.364242 INFO::Fitting model to feature number 120, PWY_5505__L_glutamate_and_L_glutamine_biosynthesis_unclassified
|+++++++++++++++++++++ | 42% ~10s 2024-11-26 12:08:20.373425 INFO::Fitting model to feature number 121, PWY_5659__GDP_mannose_biosynthesis
2024-11-26 12:08:20.376185 INFO::Fitting model to feature number 122, PWY_5659__GDP_mannose_biosynthesis_unclassified
2024-11-26 12:08:20.378715 INFO::Fitting model to feature number 123, PWY_5667__CDP_diacylglycerol_biosynthesis_I
|++++++++++++++++++++++ | 43% ~10s 2024-11-26 12:08:20.387746 INFO::Fitting model to feature number 124, PWY_5667__CDP_diacylglycerol_biosynthesis_I_unclassified
2024-11-26 12:08:20.3903 INFO::Fitting model to feature number 125, PWY_5686__UMP_biosynthesis_I
2024-11-26 12:08:20.392529 INFO::Fitting model to feature number 126, PWY_5686__UMP_biosynthesis_I_unclassified
|++++++++++++++++++++++ | 44% ~10s 2024-11-26 12:08:20.400126 INFO::Fitting model to feature number 127, PWY_5695__inosine_5_phosphate_degradation
2024-11-26 12:08:20.402637 INFO::Fitting model to feature number 128, PWY_5695__inosine_5_phosphate_degradation_unclassified
2024-11-26 12:08:20.404882 INFO::Fitting model to feature number 129, PWY_5941__glycogen_degradation_II
|+++++++++++++++++++++++ | 45% ~09s 2024-11-26 12:08:20.413086 INFO::Fitting model to feature number 130, PWY_5941__glycogen_degradation_II_unclassified
2024-11-26 12:08:20.416025 INFO::Fitting model to feature number 131, PWY_5973__cis_vaccenate_biosynthesis
2024-11-26 12:08:20.418925 INFO::Fitting model to feature number 132, PWY_5973__cis_vaccenate_biosynthesis_unclassified
|+++++++++++++++++++++++ | 46% ~09s 2024-11-26 12:08:20.427591 INFO::Fitting model to feature number 133, PWY_6121__5_aminoimidazole_ribonucleotide_biosynthesis_I
2024-11-26 12:08:20.430133 INFO::Fitting model to feature number 134, PWY_6121__5_aminoimidazole_ribonucleotide_biosynthesis_I_unclassified
2024-11-26 12:08:20.432753 INFO::Fitting model to feature number 135, PWY_6122__5_aminoimidazole_ribonucleotide_biosynthesis_II
|++++++++++++++++++++++++ | 47% ~08s 2024-11-26 12:08:20.439928 INFO::Fitting model to feature number 136, PWY_6122__5_aminoimidazole_ribonucleotide_biosynthesis_II_unclassified
2024-11-26 12:08:20.442389 INFO::Fitting model to feature number 137, PWY_6123__inosine_5_phosphate_biosynthesis_I
2024-11-26 12:08:20.444886 INFO::Fitting model to feature number 138, PWY_6123__inosine_5_phosphate_biosynthesis_I_unclassified
|++++++++++++++++++++++++ | 48% ~08s 2024-11-26 12:08:20.453043 INFO::Fitting model to feature number 139, PWY_6124__inosine_5_phosphate_biosynthesis_II
2024-11-26 12:08:20.455907 INFO::Fitting model to feature number 140, PWY_6124__inosine_5_phosphate_biosynthesis_II_unclassified
2024-11-26 12:08:20.459077 INFO::Fitting model to feature number 141, PWY_6125__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_II
|+++++++++++++++++++++++++ | 49% ~08s 2024-11-26 12:08:20.684879 INFO::Fitting model to feature number 142, PWY_6125__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_II_unclassified
2024-11-26 12:08:20.687411 INFO::Fitting model to feature number 143, PWY_6126__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_II
2024-11-26 12:08:20.689618 INFO::Fitting model to feature number 144, PWY_6126__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_II_unclassified
|+++++++++++++++++++++++++ | 50% ~08s 2024-11-26 12:08:20.695973 INFO::Fitting model to feature number 145, PWY_6151__S_adenosyl_L_methionine_salvage_I
2024-11-26 12:08:20.698293 INFO::Fitting model to feature number 146, PWY_6151__S_adenosyl_L_methionine_salvage_I_unclassified
2024-11-26 12:08:20.700455 INFO::Fitting model to feature number 147, PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate
|++++++++++++++++++++++++++ | 51% ~07s 2024-11-26 12:08:20.707056 INFO::Fitting model to feature number 148, PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate_unclassified
2024-11-26 12:08:20.709413 INFO::Fitting model to feature number 149, PWY_6277__superpathway_of_5_aminoimidazole_ribonucleotide_biosynthesis
2024-11-26 12:08:20.711552 INFO::Fitting model to feature number 150, PWY_6277__superpathway_of_5_aminoimidazole_ribonucleotide_biosynthesis_unclassified
|+++++++++++++++++++++++++++ | 52% ~07s 2024-11-26 12:08:20.718101 INFO::Fitting model to feature number 151, PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian_
2024-11-26 12:08:20.720453 INFO::Fitting model to feature number 152, PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian__unclassified
2024-11-26 12:08:20.722567 INFO::Fitting model to feature number 153, PWY_6317__D_galactose_degradation_I__Leloir_pathway_
|+++++++++++++++++++++++++++ | 53% ~07s 2024-11-26 12:08:20.729687 INFO::Fitting model to feature number 154, PWY_6317__D_galactose_degradation_I__Leloir_pathway__unclassified
2024-11-26 12:08:20.732362 INFO::Fitting model to feature number 155, PWY_6353__purine_nucleotides_degradation_II__aerobic_
2024-11-26 12:08:21.003449 INFO::Fitting model to feature number 156, PWY_6353__purine_nucleotides_degradation_II__aerobic__unclassified
|++++++++++++++++++++++++++++ | 54% ~07s 2024-11-26 12:08:21.013228 INFO::Fitting model to feature number 157, PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria_
2024-11-26 12:08:21.015857 INFO::Fitting model to feature number 158, PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria__unclassified
2024-11-26 12:08:21.018565 INFO::Fitting model to feature number 159, PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing_
|++++++++++++++++++++++++++++ | 55% ~07s 2024-11-26 12:08:21.026188 INFO::Fitting model to feature number 160, PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing__unclassified
2024-11-26 12:08:21.028581 INFO::Fitting model to feature number 161, PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:21.031045 INFO::Fitting model to feature number 162, PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing__unclassified
|+++++++++++++++++++++++++++++ | 56% ~06s 2024-11-26 12:08:21.038451 INFO::Fitting model to feature number 163, PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation
2024-11-26 12:08:21.041891 INFO::Fitting model to feature number 164, PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation_unclassified
2024-11-26 12:08:21.044383 INFO::Fitting model to feature number 165, PWY_6527__stachyose_degradation
|+++++++++++++++++++++++++++++ | 57% ~06s 2024-11-26 12:08:21.05233 INFO::Fitting model to feature number 166, PWY_6527__stachyose_degradation_unclassified
2024-11-26 12:08:21.276794 INFO::Fitting model to feature number 167, PWY_6588__pyruvate_fermentation_to_acetone
2024-11-26 12:08:21.279171 INFO::Fitting model to feature number 168, PWY_6588__pyruvate_fermentation_to_acetone_unclassified
|++++++++++++++++++++++++++++++ | 58% ~06s 2024-11-26 12:08:21.290515 INFO::Fitting model to feature number 169, PWY_6590__superpathway_of_Clostridium_acetobutylicum_acidogenic_fermentation
2024-11-26 12:08:21.292932 INFO::Fitting model to feature number 170, PWY_6590__superpathway_of_Clostridium_acetobutylicum_acidogenic_fermentation_unclassified
2024-11-26 12:08:21.295221 INFO::Fitting model to feature number 171, PWY_6606__guanosine_nucleotides_degradation_II
|++++++++++++++++++++++++++++++ | 59% ~06s 2024-11-26 12:08:21.305904 INFO::Fitting model to feature number 172, PWY_6606__guanosine_nucleotides_degradation_II_unclassified
2024-11-26 12:08:21.308603 INFO::Fitting model to feature number 173, PWY_6608__guanosine_nucleotides_degradation_III
2024-11-26 12:08:21.312019 INFO::Fitting model to feature number 174, PWY_6608__guanosine_nucleotides_degradation_III_unclassified
|+++++++++++++++++++++++++++++++ | 60% ~05s 2024-11-26 12:08:21.320927 INFO::Fitting model to feature number 175, PWY_6609__adenine_and_adenosine_salvage_III
2024-11-26 12:08:21.323249 INFO::Fitting model to feature number 176, PWY_6609__adenine_and_adenosine_salvage_III_unclassified
2024-11-26 12:08:21.538075 INFO::Fitting model to feature number 177, PWY_6628__superpathway_of_L_phenylalanine_biosynthesis
|+++++++++++++++++++++++++++++++ | 61% ~05s 2024-11-26 12:08:21.553088 INFO::Fitting model to feature number 178, PWY_6628__superpathway_of_L_phenylalanine_biosynthesis_unclassified
2024-11-26 12:08:21.555758 INFO::Fitting model to feature number 179, PWY_6630__superpathway_of_L_tyrosine_biosynthesis
2024-11-26 12:08:21.557913 INFO::Fitting model to feature number 180, PWY_6630__superpathway_of_L_tyrosine_biosynthesis_unclassified
|++++++++++++++++++++++++++++++++ | 62% ~05s 2024-11-26 12:08:21.571113 INFO::Fitting model to feature number 181, PWY_6700__queuosine_biosynthesis_I__de_novo_
2024-11-26 12:08:21.573892 INFO::Fitting model to feature number 182, PWY_6700__queuosine_biosynthesis_I__de_novo__unclassified
2024-11-26 12:08:21.577532 INFO::Fitting model to feature number 183, PWY_6703__preQ0_biosynthesis
|++++++++++++++++++++++++++++++++ | 64% ~05s 2024-11-26 12:08:21.770696 INFO::Fitting model to feature number 184, PWY_6703__preQ0_biosynthesis_unclassified
2024-11-26 12:08:21.804561 INFO::Fitting model to feature number 185, PWY_6731__starch_degradation_III
2024-11-26 12:08:21.808438 INFO::Fitting model to feature number 186, PWY_6731__starch_degradation_III_unclassified
|+++++++++++++++++++++++++++++++++ | 65% ~05s 2024-11-26 12:08:21.818512 INFO::Fitting model to feature number 187, PWY_6897__thiamine_diphosphate_salvage_II
2024-11-26 12:08:21.820745 INFO::Fitting model to feature number 188, PWY_6897__thiamine_diphosphate_salvage_II_unclassified
2024-11-26 12:08:21.824422 INFO::Fitting model to feature number 189, PWY_6936__seleno_amino_acid_biosynthesis__plants_
|+++++++++++++++++++++++++++++++++ | 66% ~05s 2024-11-26 12:08:21.832187 INFO::Fitting model to feature number 190, PWY_6936__seleno_amino_acid_biosynthesis__plants__unclassified
2024-11-26 12:08:21.837956 INFO::Fitting model to feature number 191, PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase_
2024-11-26 12:08:21.840933 INFO::Fitting model to feature number 192, PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase__unclassified
|++++++++++++++++++++++++++++++++++ | 67% ~04s 2024-11-26 12:08:21.851484 INFO::Fitting model to feature number 193, PWY_702__L_methionine_biosynthesis_II
2024-11-26 12:08:22.073107 INFO::Fitting model to feature number 194, PWY_702__L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:22.075847 INFO::Fitting model to feature number 195, PWY_7111__pyruvate_fermentation_to_isobutanol__engineered_
|++++++++++++++++++++++++++++++++++ | 68% ~04s 2024-11-26 12:08:22.08332 INFO::Fitting model to feature number 196, PWY_7111__pyruvate_fermentation_to_isobutanol__engineered__unclassified
2024-11-26 12:08:22.086296 INFO::Fitting model to feature number 197, PWY_7197__pyrimidine_deoxyribonucleotide_phosphorylation
2024-11-26 12:08:22.088867 INFO::Fitting model to feature number 198, PWY_7197__pyrimidine_deoxyribonucleotide_phosphorylation_unclassified
|+++++++++++++++++++++++++++++++++++ | 69% ~04s 2024-11-26 12:08:22.096762 INFO::Fitting model to feature number 199, PWY_7199__pyrimidine_deoxyribonucleosides_salvage
2024-11-26 12:08:22.100012 INFO::Fitting model to feature number 200, PWY_7199__pyrimidine_deoxyribonucleosides_salvage_unclassified
2024-11-26 12:08:22.102178 INFO::Fitting model to feature number 201, PWY_7208__superpathway_of_pyrimidine_nucleobases_salvage
|+++++++++++++++++++++++++++++++++++ | 70% ~04s 2024-11-26 12:08:22.109846 INFO::Fitting model to feature number 202, PWY_7208__superpathway_of_pyrimidine_nucleobases_salvage_unclassified
2024-11-26 12:08:22.11238 INFO::Fitting model to feature number 203, PWY_7220__adenosine_deoxyribonucleotides_de_novo_biosynthesis_II
2024-11-26 12:08:22.114948 INFO::Fitting model to feature number 204, PWY_7220__adenosine_deoxyribonucleotides_de_novo_biosynthesis_II_unclassified
|++++++++++++++++++++++++++++++++++++ | 71% ~04s 2024-11-26 12:08:22.319552 INFO::Fitting model to feature number 205, PWY_7221__guanosine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:22.355049 INFO::Fitting model to feature number 206, PWY_7221__guanosine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:22.357262 INFO::Fitting model to feature number 207, PWY_7222__guanosine_deoxyribonucleotides_de_novo_biosynthesis_II
|++++++++++++++++++++++++++++++++++++ | 72% ~04s 2024-11-26 12:08:22.364298 INFO::Fitting model to feature number 208, PWY_7222__guanosine_deoxyribonucleotides_de_novo_biosynthesis_II_unclassified
2024-11-26 12:08:22.366587 INFO::Fitting model to feature number 209, PWY_7228__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:22.36875 INFO::Fitting model to feature number 210, PWY_7228__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_I_unclassified
|+++++++++++++++++++++++++++++++++++++ | 73% ~04s 2024-11-26 12:08:22.378385 INFO::Fitting model to feature number 211, PWY_7229__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:22.381157 INFO::Fitting model to feature number 212, PWY_7229__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_I_unclassified
2024-11-26 12:08:22.383388 INFO::Fitting model to feature number 213, PWY_7238__sucrose_biosynthesis_II
|+++++++++++++++++++++++++++++++++++++ | 74% ~03s 2024-11-26 12:08:22.391245 INFO::Fitting model to feature number 214, PWY_7238__sucrose_biosynthesis_II_unclassified
2024-11-26 12:08:22.393994 INFO::Fitting model to feature number 215, PWY_7242__D_fructuronate_degradation
2024-11-26 12:08:22.396453 INFO::Fitting model to feature number 216, PWY_7242__D_fructuronate_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++ | 75% ~03s 2024-11-26 12:08:22.623174 INFO::Fitting model to feature number 217, PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II
2024-11-26 12:08:22.625688 INFO::Fitting model to feature number 218, PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:22.628038 INFO::Fitting model to feature number 219, PWY_7323__superpathway_of_GDP_mannose_derived_O_antigen_building_blocks_biosynthesis
|+++++++++++++++++++++++++++++++++++++++ | 76% ~03s 2024-11-26 12:08:22.640298 INFO::Fitting model to feature number 220, PWY_7323__superpathway_of_GDP_mannose_derived_O_antigen_building_blocks_biosynthesis_unclassified
2024-11-26 12:08:22.643269 INFO::Fitting model to feature number 221, PWY_7328__superpathway_of_UDP_glucose_derived_O_antigen_building_blocks_biosynthesis
2024-11-26 12:08:22.645559 INFO::Fitting model to feature number 222, PWY_7328__superpathway_of_UDP_glucose_derived_O_antigen_building_blocks_biosynthesis_unclassified
|+++++++++++++++++++++++++++++++++++++++ | 77% ~03s 2024-11-26 12:08:22.65448 INFO::Fitting model to feature number 223, PWY_7357__thiamine_phosphate_formation_from_pyrithiamine_and_oxythiamine__yeast_
2024-11-26 12:08:22.657259 INFO::Fitting model to feature number 224, PWY_7357__thiamine_phosphate_formation_from_pyrithiamine_and_oxythiamine__yeast__unclassified
2024-11-26 12:08:22.65986 INFO::Fitting model to feature number 225, PWY_7400__L_arginine_biosynthesis_IV__archaebacteria_
|++++++++++++++++++++++++++++++++++++++++ | 78% ~03s 2024-11-26 12:08:22.669309 INFO::Fitting model to feature number 226, PWY_7400__L_arginine_biosynthesis_IV__archaebacteria__unclassified
2024-11-26 12:08:22.671762 INFO::Fitting model to feature number 227, PWY_7456___beta___1_4__mannan_degradation
2024-11-26 12:08:22.898363 INFO::Fitting model to feature number 228, PWY_7456___beta___1_4__mannan_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++++ | 79% ~03s 2024-11-26 12:08:22.905497 INFO::Fitting model to feature number 229, PWY_7560__methylerythritol_phosphate_pathway_II
2024-11-26 12:08:22.90783 INFO::Fitting model to feature number 230, PWY_7560__methylerythritol_phosphate_pathway_II_unclassified
2024-11-26 12:08:22.909965 INFO::Fitting model to feature number 231, PWY_7663__gondoate_biosynthesis__anaerobic_
|+++++++++++++++++++++++++++++++++++++++++ | 80% ~02s 2024-11-26 12:08:22.917429 INFO::Fitting model to feature number 232, PWY_7663__gondoate_biosynthesis__anaerobic__unclassified
2024-11-26 12:08:22.919715 INFO::Fitting model to feature number 233, PWY_7790__UMP_biosynthesis_II
2024-11-26 12:08:22.921858 INFO::Fitting model to feature number 234, PWY_7790__UMP_biosynthesis_II_unclassified
|+++++++++++++++++++++++++++++++++++++++++ | 81% ~02s 2024-11-26 12:08:22.929958 INFO::Fitting model to feature number 235, PWY_7791__UMP_biosynthesis_III
2024-11-26 12:08:22.932817 INFO::Fitting model to feature number 236, PWY_7791__UMP_biosynthesis_III_unclassified
2024-11-26 12:08:22.935663 INFO::Fitting model to feature number 237, PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic_
|++++++++++++++++++++++++++++++++++++++++++ | 82% ~02s 2024-11-26 12:08:22.945641 INFO::Fitting model to feature number 238, PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic__unclassified
2024-11-26 12:08:23.180671 INFO::Fitting model to feature number 239, PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing_
2024-11-26 12:08:23.183027 INFO::Fitting model to feature number 240, PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing__unclassified
|++++++++++++++++++++++++++++++++++++++++++ | 83% ~02s 2024-11-26 12:08:23.191434 INFO::Fitting model to feature number 241, PWY_7977__L_methionine_biosynthesis_IV
2024-11-26 12:08:23.193791 INFO::Fitting model to feature number 242, PWY_7977__L_methionine_biosynthesis_IV_unclassified
2024-11-26 12:08:23.195885 INFO::Fitting model to feature number 243, PWY_8178__pentose_phosphate_pathway__non_oxidative_branch__II
|+++++++++++++++++++++++++++++++++++++++++++ | 84% ~02s 2024-11-26 12:08:23.201754 INFO::Fitting model to feature number 244, PWY_8178__pentose_phosphate_pathway__non_oxidative_branch__II_unclassified
2024-11-26 12:08:23.203903 INFO::Fitting model to feature number 245, PWY_841__superpathway_of_purine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:23.206 INFO::Fitting model to feature number 246, PWY_841__superpathway_of_purine_nucleotides_de_novo_biosynthesis_I_unclassified
|+++++++++++++++++++++++++++++++++++++++++++ | 85% ~02s 2024-11-26 12:08:23.213333 INFO::Fitting model to feature number 247, PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine_
2024-11-26 12:08:23.215957 INFO::Fitting model to feature number 248, PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine__unclassified
2024-11-26 12:08:23.218178 INFO::Fitting model to feature number 249, PWY0_1296__purine_ribonucleosides_degradation
|++++++++++++++++++++++++++++++++++++++++++++ | 86% ~02s 2024-11-26 12:08:23.22618 INFO::Fitting model to feature number 250, PWY0_1296__purine_ribonucleosides_degradation_unclassified
2024-11-26 12:08:23.228517 INFO::Fitting model to feature number 251, PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation
2024-11-26 12:08:23.44342 INFO::Fitting model to feature number 252, PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++++++++ | 88% ~02s 2024-11-26 12:08:23.458811 INFO::Fitting model to feature number 253, PWY0_1319__CDP_diacylglycerol_biosynthesis_II
2024-11-26 12:08:23.46434 INFO::Fitting model to feature number 254, PWY0_1319__CDP_diacylglycerol_biosynthesis_II_unclassified
2024-11-26 12:08:23.468455 INFO::Fitting model to feature number 255, PWY0_1477__ethanolamine_utilization
|+++++++++++++++++++++++++++++++++++++++++++++ | 89% ~01s 2024-11-26 12:08:23.478987 INFO::Fitting model to feature number 256, PWY0_1477__ethanolamine_utilization_unclassified
2024-11-26 12:08:23.481365 INFO::Fitting model to feature number 257, PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing_
2024-11-26 12:08:23.485458 INFO::Fitting model to feature number 258, PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing__unclassified
|+++++++++++++++++++++++++++++++++++++++++++++ | 90% ~01s 2024-11-26 12:08:23.704713 INFO::Fitting model to feature number 259, PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:23.709369 INFO::Fitting model to feature number 260, PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:23.712448 INFO::Fitting model to feature number 261, PWY1ZNC_1__assimilatory_sulfate_reduction_IV
|++++++++++++++++++++++++++++++++++++++++++++++ | 91% ~01s 2024-11-26 12:08:23.720278 INFO::Fitting model to feature number 262, PWY1ZNC_1__assimilatory_sulfate_reduction_IV_unclassified
2024-11-26 12:08:23.722639 INFO::Fitting model to feature number 263, PWY4LZ_257__superpathway_of_fermentation__Chlamydomonas_reinhardtii_
2024-11-26 12:08:23.72477 INFO::Fitting model to feature number 264, PWY66_429__fatty_acid_biosynthesis_initiation__mitochondria_
|++++++++++++++++++++++++++++++++++++++++++++++ | 92% ~01s 2024-11-26 12:08:23.731349 INFO::Fitting model to feature number 265, PWY66_429__fatty_acid_biosynthesis_initiation__mitochondria__unclassified
2024-11-26 12:08:23.733846 INFO::Fitting model to feature number 266, PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate_
2024-11-26 12:08:23.736375 INFO::Fitting model to feature number 267, PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate__unclassified
|+++++++++++++++++++++++++++++++++++++++++++++++ | 93% ~01s 2024-11-26 12:08:23.742871 INFO::Fitting model to feature number 268, RHAMCAT_PWY__L_rhamnose_degradation_I
2024-11-26 12:08:23.745483 INFO::Fitting model to feature number 269, RHAMCAT_PWY__L_rhamnose_degradation_I_unclassified
2024-11-26 12:08:23.747743 INFO::Fitting model to feature number 270, RIBOSYN2_PWY__flavin_biosynthesis_I__bacteria_and_plants_
|+++++++++++++++++++++++++++++++++++++++++++++++ | 94% ~01s 2024-11-26 12:08:23.7611 INFO::Fitting model to feature number 271, RIBOSYN2_PWY__flavin_biosynthesis_I__bacteria_and_plants__unclassified
2024-11-26 12:08:23.763831 INFO::Fitting model to feature number 272, SALVADEHYPOX_PWY__adenosine_nucleotides_degradation_II
2024-11-26 12:08:23.765994 INFO::Fitting model to feature number 273, SALVADEHYPOX_PWY__adenosine_nucleotides_degradation_II_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++ | 95% ~01s 2024-11-26 12:08:23.774402 INFO::Fitting model to feature number 274, SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I
2024-11-26 12:08:23.777093 INFO::Fitting model to feature number 275, SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I_unclassified
2024-11-26 12:08:23.779222 INFO::Fitting model to feature number 276, SO4ASSIM_PWY__assimilatory_sulfate_reduction_I
|++++++++++++++++++++++++++++++++++++++++++++++++ | 96% ~00s 2024-11-26 12:08:23.786484 INFO::Fitting model to feature number 277, SO4ASSIM_PWY__assimilatory_sulfate_reduction_I_unclassified
2024-11-26 12:08:23.789736 INFO::Fitting model to feature number 278, SULFATE_CYS_PWY__superpathway_of_sulfate_assimilation_and_cysteine_biosynthesis
2024-11-26 12:08:23.792384 INFO::Fitting model to feature number 279, SULFATE_CYS_PWY__superpathway_of_sulfate_assimilation_and_cysteine_biosynthesis_unclassified
|+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~00s 2024-11-26 12:08:23.80056 INFO::Fitting model to feature number 280, THRESYN_PWY__superpathway_of_L_threonine_biosynthesis
2024-11-26 12:08:23.803176 INFO::Fitting model to feature number 281, THRESYN_PWY__superpathway_of_L_threonine_biosynthesis_unclassified
2024-11-26 12:08:24.01977 INFO::Fitting model to feature number 282, TRNA_CHARGING_PWY__tRNA_charging
|+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~00s 2024-11-26 12:08:24.033264 INFO::Fitting model to feature number 283, TRNA_CHARGING_PWY__tRNA_charging_unclassified
2024-11-26 12:08:24.036561 INFO::Fitting model to feature number 284, UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I
2024-11-26 12:08:24.03885 INFO::Fitting model to feature number 285, UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s 2024-11-26 12:08:24.047465 INFO::Fitting model to feature number 286, VALSYN_PWY__L_valine_biosynthesis
2024-11-26 12:08:24.049928 INFO::Fitting model to feature number 287, VALSYN_PWY__L_valine_biosynthesis_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=11s
2024-11-26 12:08:24.525851 INFO::Counting total values for each feature
2024-11-26 12:08:24.552725 INFO::Re-running abundances for warn_prevalence
2024-11-26 12:08:24.554451 INFO::Running selected normalization method: TSS
2024-11-26 12:08:24.560318 INFO::Running selected transform method: LOG
| | 0 % ~calculating 2024-11-26 12:08:24.573713 INFO::Fitting model to feature number 1, X1CMET2_PWY__folate_transformations_III__E__coli_
2024-11-26 12:08:24.578994 INFO::Fitting model to feature number 2, X1CMET2_PWY__folate_transformations_III__E__coli__unclassified
2024-11-26 12:08:24.58315 INFO::Fitting model to feature number 3, ANAEROFRUCAT_PWY__homolactic_fermentation
|+ | 1 % ~02s 2024-11-26 12:08:24.592808 INFO::Fitting model to feature number 4, ANAEROFRUCAT_PWY__homolactic_fermentation_unclassified
2024-11-26 12:08:24.597556 INFO::Fitting model to feature number 5, ANAGLYCOLYSIS_PWY__glycolysis_III__from_glucose_
2024-11-26 12:08:24.60158 INFO::Fitting model to feature number 6, ANAGLYCOLYSIS_PWY__glycolysis_III__from_glucose__unclassified
|++ | 2 % ~02s 2024-11-26 12:08:24.613375 INFO::Fitting model to feature number 7, ARGSYN_PWY__L_arginine_biosynthesis_I__via_L_ornithine_
2024-11-26 12:08:24.618369 INFO::Fitting model to feature number 8, ARGSYN_PWY__L_arginine_biosynthesis_I__via_L_ornithine__unclassified
2024-11-26 12:08:24.622284 INFO::Fitting model to feature number 9, ARGSYNBSUB_PWY__L_arginine_biosynthesis_II__acetyl_cycle_
|++ | 3 % ~02s 2024-11-26 12:08:24.633405 INFO::Fitting model to feature number 10, ARGSYNBSUB_PWY__L_arginine_biosynthesis_II__acetyl_cycle__unclassified
2024-11-26 12:08:24.638243 INFO::Fitting model to feature number 11, ARO_PWY__chorismate_biosynthesis_I
2024-11-26 12:08:24.642095 INFO::Fitting model to feature number 12, ARO_PWY__chorismate_biosynthesis_I_unclassified
|+++ | 4 % ~02s 2024-11-26 12:08:24.651183 INFO::Fitting model to feature number 13, ASPASN_PWY__superpathway_of_L_aspartate_and_L_asparagine_biosynthesis
2024-11-26 12:08:24.65575 INFO::Fitting model to feature number 14, ASPASN_PWY__superpathway_of_L_aspartate_and_L_asparagine_biosynthesis_unclassified
2024-11-26 12:08:24.659701 INFO::Fitting model to feature number 15, BRANCHED_CHAIN_AA_SYN_PWY__superpathway_of_branched_chain_amino_acid_biosynthesis
|+++ | 5 % ~02s 2024-11-26 12:08:24.670856 INFO::Fitting model to feature number 16, BRANCHED_CHAIN_AA_SYN_PWY__superpathway_of_branched_chain_amino_acid_biosynthesis_unclassified
2024-11-26 12:08:24.67486 INFO::Fitting model to feature number 17, CALVIN_PWY__Calvin_Benson_Bassham_cycle
2024-11-26 12:08:24.684588 INFO::Fitting model to feature number 18, CALVIN_PWY__Calvin_Benson_Bassham_cycle_unclassified
|++++ | 6 % ~02s 2024-11-26 12:08:24.698766 INFO::Fitting model to feature number 19, CENTFERM_PWY__pyruvate_fermentation_to_butanoate
2024-11-26 12:08:24.704095 INFO::Fitting model to feature number 20, CENTFERM_PWY__pyruvate_fermentation_to_butanoate_unclassified
2024-11-26 12:08:24.708232 INFO::Fitting model to feature number 21, COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals_
|++++ | 7 % ~02s 2024-11-26 12:08:24.752662 INFO::Fitting model to feature number 22, COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals__unclassified
2024-11-26 12:08:24.756924 INFO::Fitting model to feature number 23, COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic_
2024-11-26 12:08:24.760874 INFO::Fitting model to feature number 24, COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic__unclassified
|+++++ | 8 % ~02s 2024-11-26 12:08:24.769578 INFO::Fitting model to feature number 25, COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I
2024-11-26 12:08:24.774102 INFO::Fitting model to feature number 26, COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I_unclassified
2024-11-26 12:08:24.778575 INFO::Fitting model to feature number 27, COLANSYN_PWY__colanic_acid_building_blocks_biosynthesis
|+++++ | 9 % ~02s 2024-11-26 12:08:24.787562 INFO::Fitting model to feature number 28, COLANSYN_PWY__colanic_acid_building_blocks_biosynthesis_unclassified
2024-11-26 12:08:24.791631 INFO::Fitting model to feature number 29, COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis
2024-11-26 12:08:24.795399 INFO::Fitting model to feature number 30, COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis_unclassified
|++++++ | 10% ~02s 2024-11-26 12:08:24.804366 INFO::Fitting model to feature number 31, DAPLYSINESYN_PWY__L_lysine_biosynthesis_I
2024-11-26 12:08:24.81106 INFO::Fitting model to feature number 32, DAPLYSINESYN_PWY__L_lysine_biosynthesis_I_unclassified
2024-11-26 12:08:24.815118 INFO::Fitting model to feature number 33, DARABCATK12_PWY__D_arabinose_degradation_I
|++++++ | 11% ~02s 2024-11-26 12:08:24.826334 INFO::Fitting model to feature number 34, DARABCATK12_PWY__D_arabinose_degradation_I_unclassified
2024-11-26 12:08:24.831149 INFO::Fitting model to feature number 35, DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis
2024-11-26 12:08:24.835002 INFO::Fitting model to feature number 36, DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis_unclassified
|+++++++ | 12% ~02s 2024-11-26 12:08:24.84442 INFO::Fitting model to feature number 37, FERMENTATION_PWY__mixed_acid_fermentation
2024-11-26 12:08:24.848562 INFO::Fitting model to feature number 38, FERMENTATION_PWY__mixed_acid_fermentation_unclassified
2024-11-26 12:08:25.066413 INFO::Fitting model to feature number 39, FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation
|+++++++ | 14% ~03s 2024-11-26 12:08:25.078145 INFO::Fitting model to feature number 40, FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation_unclassified
2024-11-26 12:08:25.083126 INFO::Fitting model to feature number 41, FUCCAT_PWY__fucose_degradation
2024-11-26 12:08:25.086906 INFO::Fitting model to feature number 42, FUCCAT_PWY__fucose_degradation_unclassified
|++++++++ | 15% ~03s 2024-11-26 12:08:25.099472 INFO::Fitting model to feature number 43, GALACT_GLUCUROCAT_PWY__superpathway_of_hexuronide_and_hexuronate_degradation
2024-11-26 12:08:25.105295 INFO::Fitting model to feature number 44, GALACT_GLUCUROCAT_PWY__superpathway_of_hexuronide_and_hexuronate_degradation_unclassified
2024-11-26 12:08:25.110163 INFO::Fitting model to feature number 45, GALACTUROCAT_PWY__D_galacturonate_degradation_I
|++++++++ | 16% ~04s 2024-11-26 12:08:25.33565 INFO::Fitting model to feature number 46, GALACTUROCAT_PWY__D_galacturonate_degradation_I_unclassified
2024-11-26 12:08:25.340314 INFO::Fitting model to feature number 47, GLCMANNANAUT_PWY__superpathway_of_N_acetylglucosamine__N_acetylmannosamine_and_N_acetylneuraminate_degradation
2024-11-26 12:08:25.344049 INFO::Fitting model to feature number 48, GLCMANNANAUT_PWY__superpathway_of_N_acetylglucosamine__N_acetylmannosamine_and_N_acetylneuraminate_degradation_unclassified
|+++++++++ | 17% ~04s 2024-11-26 12:08:25.355333 INFO::Fitting model to feature number 49, GLUCONEO_PWY__gluconeogenesis_I
2024-11-26 12:08:25.359561 INFO::Fitting model to feature number 50, GLUCONEO_PWY__gluconeogenesis_I_unclassified
2024-11-26 12:08:25.363485 INFO::Fitting model to feature number 51, GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation
|+++++++++ | 18% ~04s 2024-11-26 12:08:25.376307 INFO::Fitting model to feature number 52, GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation_unclassified
2024-11-26 12:08:25.597579 INFO::Fitting model to feature number 53, GLUTORN_PWY__L_ornithine_biosynthesis_I
2024-11-26 12:08:25.601398 INFO::Fitting model to feature number 54, GLUTORN_PWY__L_ornithine_biosynthesis_I_unclassified
|++++++++++ | 19% ~05s 2024-11-26 12:08:25.617205 INFO::Fitting model to feature number 55, GLYCOGENSYNTH_PWY__glycogen_biosynthesis_I__from_ADP_D_Glucose_
2024-11-26 12:08:25.621121 INFO::Fitting model to feature number 56, GLYCOGENSYNTH_PWY__glycogen_biosynthesis_I__from_ADP_D_Glucose__unclassified
2024-11-26 12:08:25.624784 INFO::Fitting model to feature number 57, GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate_
|++++++++++ | 20% ~04s 2024-11-26 12:08:25.641708 INFO::Fitting model to feature number 58, GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate__unclassified
2024-11-26 12:08:25.822977 INFO::Fitting model to feature number 59, HISTSYN_PWY__L_histidine_biosynthesis
2024-11-26 12:08:25.826938 INFO::Fitting model to feature number 60, HISTSYN_PWY__L_histidine_biosynthesis_unclassified
|+++++++++++ | 21% ~05s 2024-11-26 12:08:25.836905 INFO::Fitting model to feature number 61, HOMOSER_METSYN_PWY__L_methionine_biosynthesis_I
2024-11-26 12:08:25.841669 INFO::Fitting model to feature number 62, HOMOSER_METSYN_PWY__L_methionine_biosynthesis_I_unclassified
2024-11-26 12:08:25.845486 INFO::Fitting model to feature number 63, HSERMETANA_PWY__L_methionine_biosynthesis_III
|+++++++++++ | 22% ~05s 2024-11-26 12:08:25.86395 INFO::Fitting model to feature number 64, HSERMETANA_PWY__L_methionine_biosynthesis_III_unclassified
2024-11-26 12:08:25.868229 INFO::Fitting model to feature number 65, ILEUSYN_PWY__L_isoleucine_biosynthesis_I__from_threonine_
2024-11-26 12:08:26.941931 INFO::Fitting model to feature number 66, ILEUSYN_PWY__L_isoleucine_biosynthesis_I__from_threonine__unclassified
|++++++++++++ | 23% ~08s 2024-11-26 12:08:26.95652 INFO::Fitting model to feature number 67, MET_SAM_PWY__superpathway_of_S_adenosyl_L_methionine_biosynthesis
2024-11-26 12:08:26.962636 INFO::Fitting model to feature number 68, MET_SAM_PWY__superpathway_of_S_adenosyl_L_methionine_biosynthesis_unclassified
2024-11-26 12:08:26.966332 INFO::Fitting model to feature number 69, METH_ACETATE_PWY__methanogenesis_from_acetate
|++++++++++++ | 24% ~08s 2024-11-26 12:08:26.975143 INFO::Fitting model to feature number 70, METH_ACETATE_PWY__methanogenesis_from_acetate_unclassified
2024-11-26 12:08:26.979098 INFO::Fitting model to feature number 71, METSYN_PWY__superpathway_of_L_homoserine_and_L_methionine_biosynthesis
2024-11-26 12:08:26.983244 INFO::Fitting model to feature number 72, METSYN_PWY__superpathway_of_L_homoserine_and_L_methionine_biosynthesis_unclassified
|+++++++++++++ | 25% ~07s 2024-11-26 12:08:27.584129 INFO::Fitting model to feature number 73, NONMEVIPP_PWY__methylerythritol_phosphate_pathway_I
2024-11-26 12:08:28.517575 INFO::Fitting model to feature number 74, NONMEVIPP_PWY__methylerythritol_phosphate_pathway_I_unclassified
2024-11-26 12:08:28.521399 INFO::Fitting model to feature number 75, NONOXIPENT_PWY__pentose_phosphate_pathway__non_oxidative_branch__I
|++++++++++++++ | 26% ~11s 2024-11-26 12:08:28.541112 INFO::Fitting model to feature number 76, NONOXIPENT_PWY__pentose_phosphate_pathway__non_oxidative_branch__I_unclassified
2024-11-26 12:08:28.549691 INFO::Fitting model to feature number 77, OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli_
2024-11-26 12:08:28.554806 INFO::Fitting model to feature number 78, OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli__unclassified
|++++++++++++++ | 27% ~11s 2024-11-26 12:08:28.565957 INFO::Fitting model to feature number 79, P41_PWY__pyruvate_fermentation_to_acetate_and__S__lactate_I
2024-11-26 12:08:28.570118 INFO::Fitting model to feature number 80, P41_PWY__pyruvate_fermentation_to_acetate_and__S__lactate_I_unclassified
2024-11-26 12:08:28.574043 INFO::Fitting model to feature number 81, P461_PWY__hexitol_fermentation_to_lactate__formate__ethanol_and_acetate
|+++++++++++++++ | 28% ~10s 2024-11-26 12:08:28.58338 INFO::Fitting model to feature number 82, PANTO_PWY__phosphopantothenate_biosynthesis_I
2024-11-26 12:08:28.587641 INFO::Fitting model to feature number 83, PANTO_PWY__phosphopantothenate_biosynthesis_I_unclassified
2024-11-26 12:08:28.59157 INFO::Fitting model to feature number 84, PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria_
|+++++++++++++++ | 29% ~10s 2024-11-26 12:08:28.604972 INFO::Fitting model to feature number 85, PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria__unclassified
2024-11-26 12:08:28.608984 INFO::Fitting model to feature number 86, PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:28.612725 INFO::Fitting model to feature number 87, PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing__unclassified
|++++++++++++++++ | 30% ~09s 2024-11-26 12:08:28.621443 INFO::Fitting model to feature number 88, PPGPPMET_PWY__ppGpp_metabolism
2024-11-26 12:08:28.625392 INFO::Fitting model to feature number 89, PPGPPMET_PWY__ppGpp_metabolism_unclassified
2024-11-26 12:08:28.62929 INFO::Fitting model to feature number 90, PWY_1042__glycolysis_IV
|++++++++++++++++ | 31% ~09s 2024-11-26 12:08:28.639252 INFO::Fitting model to feature number 91, PWY_1042__glycolysis_IV_unclassified
2024-11-26 12:08:28.644064 INFO::Fitting model to feature number 92, PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis
2024-11-26 12:08:28.64811 INFO::Fitting model to feature number 93, PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis_unclassified
|+++++++++++++++++ | 32% ~09s 2024-11-26 12:08:28.660956 INFO::Fitting model to feature number 94, PWY_2942__L_lysine_biosynthesis_III
2024-11-26 12:08:28.665373 INFO::Fitting model to feature number 95, PWY_2942__L_lysine_biosynthesis_III_unclassified
2024-11-26 12:08:28.735297 INFO::Fitting model to feature number 96, PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I
|+++++++++++++++++ | 33% ~08s 2024-11-26 12:08:28.747032 INFO::Fitting model to feature number 97, PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I_unclassified
2024-11-26 12:08:28.751356 INFO::Fitting model to feature number 98, PWY_3841__folate_transformations_II__plants_
2024-11-26 12:08:28.755308 INFO::Fitting model to feature number 99, PWY_3841__folate_transformations_II__plants__unclassified
|++++++++++++++++++ | 34% ~08s 2024-11-26 12:08:28.765024 INFO::Fitting model to feature number 100, PWY_5097__L_lysine_biosynthesis_VI
2024-11-26 12:08:28.770381 INFO::Fitting model to feature number 101, PWY_5097__L_lysine_biosynthesis_VI_unclassified
2024-11-26 12:08:28.774529 INFO::Fitting model to feature number 102, PWY_5100__pyruvate_fermentation_to_acetate_and_lactate_II
|++++++++++++++++++ | 35% ~08s 2024-11-26 12:08:29.346751 INFO::Fitting model to feature number 103, PWY_5100__pyruvate_fermentation_to_acetate_and_lactate_II_unclassified
2024-11-26 12:08:29.351063 INFO::Fitting model to feature number 104, PWY_5103__L_isoleucine_biosynthesis_III
2024-11-26 12:08:29.355052 INFO::Fitting model to feature number 105, PWY_5103__L_isoleucine_biosynthesis_III_unclassified
|+++++++++++++++++++ | 36% ~08s 2024-11-26 12:08:29.369098 INFO::Fitting model to feature number 106, PWY_5130__2_oxobutanoate_degradation_I
2024-11-26 12:08:29.373136 INFO::Fitting model to feature number 107, PWY_5130__2_oxobutanoate_degradation_I_unclassified
2024-11-26 12:08:29.3826 INFO::Fitting model to feature number 108, PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline_
|+++++++++++++++++++ | 38% ~08s 2024-11-26 12:08:29.391779 INFO::Fitting model to feature number 109, PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline__unclassified
2024-11-26 12:08:29.397034 INFO::Fitting model to feature number 110, PWY_5188__tetrapyrrole_biosynthesis_I__from_glutamate_
2024-11-26 12:08:29.401086 INFO::Fitting model to feature number 111, PWY_5188__tetrapyrrole_biosynthesis_I__from_glutamate__unclassified
|++++++++++++++++++++ | 39% ~08s 2024-11-26 12:08:29.411889 INFO::Fitting model to feature number 112, PWY_5189__tetrapyrrole_biosynthesis_II__from_glycine_
2024-11-26 12:08:29.416638 INFO::Fitting model to feature number 113, PWY_5345__superpathway_of_L_methionine_biosynthesis__by_sulfhydrylation_
2024-11-26 12:08:29.420933 INFO::Fitting model to feature number 114, PWY_5345__superpathway_of_L_methionine_biosynthesis__by_sulfhydrylation__unclassified
|++++++++++++++++++++ | 40% ~07s 2024-11-26 12:08:29.429837 INFO::Fitting model to feature number 115, PWY_5347__superpathway_of_L_methionine_biosynthesis__transsulfuration_
2024-11-26 12:08:29.43393 INFO::Fitting model to feature number 116, PWY_5347__superpathway_of_L_methionine_biosynthesis__transsulfuration__unclassified
2024-11-26 12:08:29.43978 INFO::Fitting model to feature number 117, PWY_5484__glycolysis_II__from_fructose_6_phosphate_
|+++++++++++++++++++++ | 41% ~07s 2024-11-26 12:08:29.451134 INFO::Fitting model to feature number 118, PWY_5484__glycolysis_II__from_fructose_6_phosphate__unclassified
2024-11-26 12:08:29.455184 INFO::Fitting model to feature number 119, PWY_5505__L_glutamate_and_L_glutamine_biosynthesis
2024-11-26 12:08:29.459077 INFO::Fitting model to feature number 120, PWY_5505__L_glutamate_and_L_glutamine_biosynthesis_unclassified
|+++++++++++++++++++++ | 42% ~07s 2024-11-26 12:08:29.472746 INFO::Fitting model to feature number 121, PWY_5659__GDP_mannose_biosynthesis
2024-11-26 12:08:29.478077 INFO::Fitting model to feature number 122, PWY_5659__GDP_mannose_biosynthesis_unclassified
2024-11-26 12:08:29.482128 INFO::Fitting model to feature number 123, PWY_5667__CDP_diacylglycerol_biosynthesis_I
|++++++++++++++++++++++ | 43% ~07s 2024-11-26 12:08:29.492244 INFO::Fitting model to feature number 124, PWY_5667__CDP_diacylglycerol_biosynthesis_I_unclassified
2024-11-26 12:08:29.497027 INFO::Fitting model to feature number 125, PWY_5686__UMP_biosynthesis_I
2024-11-26 12:08:29.535513 INFO::Fitting model to feature number 126, PWY_5686__UMP_biosynthesis_I_unclassified
|++++++++++++++++++++++ | 44% ~06s 2024-11-26 12:08:29.545416 INFO::Fitting model to feature number 127, PWY_5695__inosine_5_phosphate_degradation
2024-11-26 12:08:29.550025 INFO::Fitting model to feature number 128, PWY_5695__inosine_5_phosphate_degradation_unclassified
2024-11-26 12:08:29.553991 INFO::Fitting model to feature number 129, PWY_5941__glycogen_degradation_II
|+++++++++++++++++++++++ | 45% ~06s 2024-11-26 12:08:29.565502 INFO::Fitting model to feature number 130, PWY_5941__glycogen_degradation_II_unclassified
2024-11-26 12:08:29.569561 INFO::Fitting model to feature number 131, PWY_5973__cis_vaccenate_biosynthesis
2024-11-26 12:08:29.573456 INFO::Fitting model to feature number 132, PWY_5973__cis_vaccenate_biosynthesis_unclassified
|+++++++++++++++++++++++ | 46% ~06s 2024-11-26 12:08:29.584462 INFO::Fitting model to feature number 133, PWY_6121__5_aminoimidazole_ribonucleotide_biosynthesis_I
2024-11-26 12:08:29.588702 INFO::Fitting model to feature number 134, PWY_6121__5_aminoimidazole_ribonucleotide_biosynthesis_I_unclassified
2024-11-26 12:08:29.5926 INFO::Fitting model to feature number 135, PWY_6122__5_aminoimidazole_ribonucleotide_biosynthesis_II
|++++++++++++++++++++++++ | 47% ~06s 2024-11-26 12:08:29.604888 INFO::Fitting model to feature number 136, PWY_6122__5_aminoimidazole_ribonucleotide_biosynthesis_II_unclassified
2024-11-26 12:08:29.609371 INFO::Fitting model to feature number 137, PWY_6123__inosine_5_phosphate_biosynthesis_I
2024-11-26 12:08:29.613331 INFO::Fitting model to feature number 138, PWY_6123__inosine_5_phosphate_biosynthesis_I_unclassified
|++++++++++++++++++++++++ | 48% ~05s 2024-11-26 12:08:29.627195 INFO::Fitting model to feature number 139, PWY_6124__inosine_5_phosphate_biosynthesis_II
2024-11-26 12:08:29.631385 INFO::Fitting model to feature number 140, PWY_6124__inosine_5_phosphate_biosynthesis_II_unclassified
2024-11-26 12:08:29.635362 INFO::Fitting model to feature number 141, PWY_6125__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_II
|+++++++++++++++++++++++++ | 49% ~05s 2024-11-26 12:08:29.645657 INFO::Fitting model to feature number 142, PWY_6125__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_II_unclassified
2024-11-26 12:08:29.650132 INFO::Fitting model to feature number 143, PWY_6126__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_II
2024-11-26 12:08:29.654047 INFO::Fitting model to feature number 144, PWY_6126__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_II_unclassified
|+++++++++++++++++++++++++ | 50% ~05s 2024-11-26 12:08:29.663 INFO::Fitting model to feature number 145, PWY_6151__S_adenosyl_L_methionine_salvage_I
2024-11-26 12:08:29.667894 INFO::Fitting model to feature number 146, PWY_6151__S_adenosyl_L_methionine_salvage_I_unclassified
2024-11-26 12:08:29.671644 INFO::Fitting model to feature number 147, PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate
|++++++++++++++++++++++++++ | 51% ~05s 2024-11-26 12:08:29.683942 INFO::Fitting model to feature number 148, PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate_unclassified
2024-11-26 12:08:29.90241 INFO::Fitting model to feature number 149, PWY_6277__superpathway_of_5_aminoimidazole_ribonucleotide_biosynthesis
2024-11-26 12:08:29.906743 INFO::Fitting model to feature number 150, PWY_6277__superpathway_of_5_aminoimidazole_ribonucleotide_biosynthesis_unclassified
|+++++++++++++++++++++++++++ | 52% ~05s 2024-11-26 12:08:29.918905 INFO::Fitting model to feature number 151, PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian_
2024-11-26 12:08:29.923151 INFO::Fitting model to feature number 152, PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian__unclassified
2024-11-26 12:08:29.927294 INFO::Fitting model to feature number 153, PWY_6317__D_galactose_degradation_I__Leloir_pathway_
|+++++++++++++++++++++++++++ | 53% ~05s 2024-11-26 12:08:29.936098 INFO::Fitting model to feature number 154, PWY_6317__D_galactose_degradation_I__Leloir_pathway__unclassified
2024-11-26 12:08:29.940137 INFO::Fitting model to feature number 155, PWY_6353__purine_nucleotides_degradation_II__aerobic_
2024-11-26 12:08:29.944053 INFO::Fitting model to feature number 156, PWY_6353__purine_nucleotides_degradation_II__aerobic__unclassified
|++++++++++++++++++++++++++++ | 54% ~05s 2024-11-26 12:08:30.160384 INFO::Fitting model to feature number 157, PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria_
2024-11-26 12:08:30.165283 INFO::Fitting model to feature number 158, PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria__unclassified
2024-11-26 12:08:30.16925 INFO::Fitting model to feature number 159, PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing_
|++++++++++++++++++++++++++++ | 55% ~05s 2024-11-26 12:08:30.182265 INFO::Fitting model to feature number 160, PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing__unclassified
2024-11-26 12:08:30.187919 INFO::Fitting model to feature number 161, PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:30.191681 INFO::Fitting model to feature number 162, PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing__unclassified
|+++++++++++++++++++++++++++++ | 56% ~04s 2024-11-26 12:08:30.204914 INFO::Fitting model to feature number 163, PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation
2024-11-26 12:08:30.210259 INFO::Fitting model to feature number 164, PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation_unclassified
2024-11-26 12:08:30.214909 INFO::Fitting model to feature number 165, PWY_6527__stachyose_degradation
|+++++++++++++++++++++++++++++ | 57% ~04s 2024-11-26 12:08:30.225543 INFO::Fitting model to feature number 166, PWY_6527__stachyose_degradation_unclassified
2024-11-26 12:08:30.229538 INFO::Fitting model to feature number 167, PWY_6588__pyruvate_fermentation_to_acetone
2024-11-26 12:08:30.233207 INFO::Fitting model to feature number 168, PWY_6588__pyruvate_fermentation_to_acetone_unclassified
|++++++++++++++++++++++++++++++ | 58% ~04s 2024-11-26 12:08:30.242379 INFO::Fitting model to feature number 169, PWY_6590__superpathway_of_Clostridium_acetobutylicum_acidogenic_fermentation
2024-11-26 12:08:30.246548 INFO::Fitting model to feature number 170, PWY_6590__superpathway_of_Clostridium_acetobutylicum_acidogenic_fermentation_unclassified
2024-11-26 12:08:30.250516 INFO::Fitting model to feature number 171, PWY_6606__guanosine_nucleotides_degradation_II
|++++++++++++++++++++++++++++++ | 59% ~04s 2024-11-26 12:08:30.476731 INFO::Fitting model to feature number 172, PWY_6606__guanosine_nucleotides_degradation_II_unclassified
2024-11-26 12:08:30.481854 INFO::Fitting model to feature number 173, PWY_6608__guanosine_nucleotides_degradation_III
2024-11-26 12:08:30.485889 INFO::Fitting model to feature number 174, PWY_6608__guanosine_nucleotides_degradation_III_unclassified
|+++++++++++++++++++++++++++++++ | 60% ~04s 2024-11-26 12:08:30.498051 INFO::Fitting model to feature number 175, PWY_6609__adenine_and_adenosine_salvage_III
2024-11-26 12:08:30.503019 INFO::Fitting model to feature number 176, PWY_6609__adenine_and_adenosine_salvage_III_unclassified
2024-11-26 12:08:30.506883 INFO::Fitting model to feature number 177, PWY_6628__superpathway_of_L_phenylalanine_biosynthesis
|+++++++++++++++++++++++++++++++ | 61% ~04s 2024-11-26 12:08:30.516175 INFO::Fitting model to feature number 178, PWY_6628__superpathway_of_L_phenylalanine_biosynthesis_unclassified
2024-11-26 12:08:30.520354 INFO::Fitting model to feature number 179, PWY_6630__superpathway_of_L_tyrosine_biosynthesis
2024-11-26 12:08:30.524161 INFO::Fitting model to feature number 180, PWY_6630__superpathway_of_L_tyrosine_biosynthesis_unclassified
|++++++++++++++++++++++++++++++++ | 62% ~04s 2024-11-26 12:08:30.534751 INFO::Fitting model to feature number 181, PWY_6700__queuosine_biosynthesis_I__de_novo_
2024-11-26 12:08:30.539028 INFO::Fitting model to feature number 182, PWY_6700__queuosine_biosynthesis_I__de_novo__unclassified
2024-11-26 12:08:30.542935 INFO::Fitting model to feature number 183, PWY_6703__preQ0_biosynthesis
|++++++++++++++++++++++++++++++++ | 64% ~03s 2024-11-26 12:08:30.5579 INFO::Fitting model to feature number 184, PWY_6703__preQ0_biosynthesis_unclassified
2024-11-26 12:08:30.56409 INFO::Fitting model to feature number 185, PWY_6731__starch_degradation_III
2024-11-26 12:08:30.56812 INFO::Fitting model to feature number 186, PWY_6731__starch_degradation_III_unclassified
|+++++++++++++++++++++++++++++++++ | 65% ~03s 2024-11-26 12:08:30.80675 INFO::Fitting model to feature number 187, PWY_6897__thiamine_diphosphate_salvage_II
2024-11-26 12:08:30.811265 INFO::Fitting model to feature number 188, PWY_6897__thiamine_diphosphate_salvage_II_unclassified
2024-11-26 12:08:30.815395 INFO::Fitting model to feature number 189, PWY_6936__seleno_amino_acid_biosynthesis__plants_
|+++++++++++++++++++++++++++++++++ | 66% ~03s 2024-11-26 12:08:30.826433 INFO::Fitting model to feature number 190, PWY_6936__seleno_amino_acid_biosynthesis__plants__unclassified
2024-11-26 12:08:30.830819 INFO::Fitting model to feature number 191, PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase_
2024-11-26 12:08:30.834851 INFO::Fitting model to feature number 192, PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase__unclassified
|++++++++++++++++++++++++++++++++++ | 67% ~03s 2024-11-26 12:08:30.845556 INFO::Fitting model to feature number 193, PWY_702__L_methionine_biosynthesis_II
2024-11-26 12:08:30.849691 INFO::Fitting model to feature number 194, PWY_702__L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:30.853609 INFO::Fitting model to feature number 195, PWY_7111__pyruvate_fermentation_to_isobutanol__engineered_
|++++++++++++++++++++++++++++++++++ | 68% ~03s 2024-11-26 12:08:30.864077 INFO::Fitting model to feature number 196, PWY_7111__pyruvate_fermentation_to_isobutanol__engineered__unclassified
2024-11-26 12:08:30.876444 INFO::Fitting model to feature number 197, PWY_7197__pyrimidine_deoxyribonucleotide_phosphorylation
2024-11-26 12:08:30.880747 INFO::Fitting model to feature number 198, PWY_7197__pyrimidine_deoxyribonucleotide_phosphorylation_unclassified
|+++++++++++++++++++++++++++++++++++ | 69% ~03s 2024-11-26 12:08:30.890765 INFO::Fitting model to feature number 199, PWY_7199__pyrimidine_deoxyribonucleosides_salvage
2024-11-26 12:08:30.894883 INFO::Fitting model to feature number 200, PWY_7199__pyrimidine_deoxyribonucleosides_salvage_unclassified
2024-11-26 12:08:30.898996 INFO::Fitting model to feature number 201, PWY_7208__superpathway_of_pyrimidine_nucleobases_salvage
|+++++++++++++++++++++++++++++++++++ | 70% ~03s 2024-11-26 12:08:31.124809 INFO::Fitting model to feature number 202, PWY_7208__superpathway_of_pyrimidine_nucleobases_salvage_unclassified
2024-11-26 12:08:31.131356 INFO::Fitting model to feature number 203, PWY_7220__adenosine_deoxyribonucleotides_de_novo_biosynthesis_II
2024-11-26 12:08:31.135482 INFO::Fitting model to feature number 204, PWY_7220__adenosine_deoxyribonucleotides_de_novo_biosynthesis_II_unclassified
|++++++++++++++++++++++++++++++++++++ | 71% ~03s 2024-11-26 12:08:31.147121 INFO::Fitting model to feature number 205, PWY_7221__guanosine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:31.151104 INFO::Fitting model to feature number 206, PWY_7221__guanosine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:31.154796 INFO::Fitting model to feature number 207, PWY_7222__guanosine_deoxyribonucleotides_de_novo_biosynthesis_II
|++++++++++++++++++++++++++++++++++++ | 72% ~03s 2024-11-26 12:08:31.164217 INFO::Fitting model to feature number 208, PWY_7222__guanosine_deoxyribonucleotides_de_novo_biosynthesis_II_unclassified
2024-11-26 12:08:31.169262 INFO::Fitting model to feature number 209, PWY_7228__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:31.173199 INFO::Fitting model to feature number 210, PWY_7228__superpathway_of_guanosine_nucleotides_de_novo_biosynthesis_I_unclassified
|+++++++++++++++++++++++++++++++++++++ | 73% ~02s 2024-11-26 12:08:31.186507 INFO::Fitting model to feature number 211, PWY_7229__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:31.191308 INFO::Fitting model to feature number 212, PWY_7229__superpathway_of_adenosine_nucleotides_de_novo_biosynthesis_I_unclassified
2024-11-26 12:08:31.195207 INFO::Fitting model to feature number 213, PWY_7238__sucrose_biosynthesis_II
|+++++++++++++++++++++++++++++++++++++ | 74% ~02s 2024-11-26 12:08:31.209023 INFO::Fitting model to feature number 214, PWY_7238__sucrose_biosynthesis_II_unclassified
2024-11-26 12:08:31.214654 INFO::Fitting model to feature number 215, PWY_7242__D_fructuronate_degradation
2024-11-26 12:08:31.218484 INFO::Fitting model to feature number 216, PWY_7242__D_fructuronate_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++ | 75% ~02s 2024-11-26 12:08:31.614228 INFO::Fitting model to feature number 217, PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II
2024-11-26 12:08:31.618469 INFO::Fitting model to feature number 218, PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:31.622421 INFO::Fitting model to feature number 219, PWY_7323__superpathway_of_GDP_mannose_derived_O_antigen_building_blocks_biosynthesis
|+++++++++++++++++++++++++++++++++++++++ | 76% ~02s 2024-11-26 12:08:31.638561 INFO::Fitting model to feature number 220, PWY_7323__superpathway_of_GDP_mannose_derived_O_antigen_building_blocks_biosynthesis_unclassified
2024-11-26 12:08:31.643991 INFO::Fitting model to feature number 221, PWY_7328__superpathway_of_UDP_glucose_derived_O_antigen_building_blocks_biosynthesis
2024-11-26 12:08:31.64773 INFO::Fitting model to feature number 222, PWY_7328__superpathway_of_UDP_glucose_derived_O_antigen_building_blocks_biosynthesis_unclassified
|+++++++++++++++++++++++++++++++++++++++ | 77% ~02s 2024-11-26 12:08:31.659732 INFO::Fitting model to feature number 223, PWY_7357__thiamine_phosphate_formation_from_pyrithiamine_and_oxythiamine__yeast_
2024-11-26 12:08:31.665117 INFO::Fitting model to feature number 224, PWY_7357__thiamine_phosphate_formation_from_pyrithiamine_and_oxythiamine__yeast__unclassified
2024-11-26 12:08:31.66937 INFO::Fitting model to feature number 225, PWY_7400__L_arginine_biosynthesis_IV__archaebacteria_
|++++++++++++++++++++++++++++++++++++++++ | 78% ~02s 2024-11-26 12:08:31.681953 INFO::Fitting model to feature number 226, PWY_7400__L_arginine_biosynthesis_IV__archaebacteria__unclassified
2024-11-26 12:08:31.686582 INFO::Fitting model to feature number 227, PWY_7456___beta___1_4__mannan_degradation
2024-11-26 12:08:31.690302 INFO::Fitting model to feature number 228, PWY_7456___beta___1_4__mannan_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++++ | 79% ~02s 2024-11-26 12:08:31.701282 INFO::Fitting model to feature number 229, PWY_7560__methylerythritol_phosphate_pathway_II
2024-11-26 12:08:31.707898 INFO::Fitting model to feature number 230, PWY_7560__methylerythritol_phosphate_pathway_II_unclassified
2024-11-26 12:08:31.71184 INFO::Fitting model to feature number 231, PWY_7663__gondoate_biosynthesis__anaerobic_
|+++++++++++++++++++++++++++++++++++++++++ | 80% ~02s 2024-11-26 12:08:31.726637 INFO::Fitting model to feature number 232, PWY_7663__gondoate_biosynthesis__anaerobic__unclassified
2024-11-26 12:08:31.731729 INFO::Fitting model to feature number 233, PWY_7790__UMP_biosynthesis_II
2024-11-26 12:08:31.735542 INFO::Fitting model to feature number 234, PWY_7790__UMP_biosynthesis_II_unclassified
|+++++++++++++++++++++++++++++++++++++++++ | 81% ~02s 2024-11-26 12:08:31.746373 INFO::Fitting model to feature number 235, PWY_7791__UMP_biosynthesis_III
2024-11-26 12:08:31.750439 INFO::Fitting model to feature number 236, PWY_7791__UMP_biosynthesis_III_unclassified
2024-11-26 12:08:31.754624 INFO::Fitting model to feature number 237, PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic_
|++++++++++++++++++++++++++++++++++++++++++ | 82% ~02s 2024-11-26 12:08:31.765763 INFO::Fitting model to feature number 238, PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic__unclassified
2024-11-26 12:08:31.769866 INFO::Fitting model to feature number 239, PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing_
2024-11-26 12:08:31.773658 INFO::Fitting model to feature number 240, PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing__unclassified
|++++++++++++++++++++++++++++++++++++++++++ | 83% ~01s 2024-11-26 12:08:31.785021 INFO::Fitting model to feature number 241, PWY_7977__L_methionine_biosynthesis_IV
2024-11-26 12:08:31.789892 INFO::Fitting model to feature number 242, PWY_7977__L_methionine_biosynthesis_IV_unclassified
2024-11-26 12:08:31.793951 INFO::Fitting model to feature number 243, PWY_8178__pentose_phosphate_pathway__non_oxidative_branch__II
|+++++++++++++++++++++++++++++++++++++++++++ | 84% ~01s 2024-11-26 12:08:31.807462 INFO::Fitting model to feature number 244, PWY_8178__pentose_phosphate_pathway__non_oxidative_branch__II_unclassified
2024-11-26 12:08:31.811895 INFO::Fitting model to feature number 245, PWY_841__superpathway_of_purine_nucleotides_de_novo_biosynthesis_I
2024-11-26 12:08:31.81558 INFO::Fitting model to feature number 246, PWY_841__superpathway_of_purine_nucleotides_de_novo_biosynthesis_I_unclassified
|+++++++++++++++++++++++++++++++++++++++++++ | 85% ~01s 2024-11-26 12:08:32.468458 INFO::Fitting model to feature number 247, PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine_
2024-11-26 12:08:32.472427 INFO::Fitting model to feature number 248, PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine__unclassified
2024-11-26 12:08:32.476166 INFO::Fitting model to feature number 249, PWY0_1296__purine_ribonucleosides_degradation
|++++++++++++++++++++++++++++++++++++++++++++ | 86% ~01s 2024-11-26 12:08:32.485459 INFO::Fitting model to feature number 250, PWY0_1296__purine_ribonucleosides_degradation_unclassified
2024-11-26 12:08:32.490127 INFO::Fitting model to feature number 251, PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation
2024-11-26 12:08:32.494081 INFO::Fitting model to feature number 252, PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation_unclassified
|++++++++++++++++++++++++++++++++++++++++++++ | 88% ~01s 2024-11-26 12:08:32.505978 INFO::Fitting model to feature number 253, PWY0_1319__CDP_diacylglycerol_biosynthesis_II
2024-11-26 12:08:32.510543 INFO::Fitting model to feature number 254, PWY0_1319__CDP_diacylglycerol_biosynthesis_II_unclassified
2024-11-26 12:08:32.514818 INFO::Fitting model to feature number 255, PWY0_1477__ethanolamine_utilization
|+++++++++++++++++++++++++++++++++++++++++++++ | 89% ~01s 2024-11-26 12:08:32.530174 INFO::Fitting model to feature number 256, PWY0_1477__ethanolamine_utilization_unclassified
2024-11-26 12:08:32.534383 INFO::Fitting model to feature number 257, PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing_
2024-11-26 12:08:32.538303 INFO::Fitting model to feature number 258, PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing__unclassified
|+++++++++++++++++++++++++++++++++++++++++++++ | 90% ~01s 2024-11-26 12:08:32.555765 INFO::Fitting model to feature number 259, PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:32.559863 INFO::Fitting model to feature number 260, PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:32.5636 INFO::Fitting model to feature number 261, PWY1ZNC_1__assimilatory_sulfate_reduction_IV
|++++++++++++++++++++++++++++++++++++++++++++++ | 91% ~01s 2024-11-26 12:08:32.573437 INFO::Fitting model to feature number 262, PWY1ZNC_1__assimilatory_sulfate_reduction_IV_unclassified
2024-11-26 12:08:32.577772 INFO::Fitting model to feature number 263, PWY4LZ_257__superpathway_of_fermentation__Chlamydomonas_reinhardtii_
2024-11-26 12:08:32.581491 INFO::Fitting model to feature number 264, PWY66_429__fatty_acid_biosynthesis_initiation__mitochondria_
|++++++++++++++++++++++++++++++++++++++++++++++ | 92% ~01s 2024-11-26 12:08:32.589464 INFO::Fitting model to feature number 265, PWY66_429__fatty_acid_biosynthesis_initiation__mitochondria__unclassified
2024-11-26 12:08:32.593405 INFO::Fitting model to feature number 266, PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate_
2024-11-26 12:08:32.597455 INFO::Fitting model to feature number 267, PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate__unclassified
|+++++++++++++++++++++++++++++++++++++++++++++++ | 93% ~01s 2024-11-26 12:08:32.606261 INFO::Fitting model to feature number 268, RHAMCAT_PWY__L_rhamnose_degradation_I
2024-11-26 12:08:32.610176 INFO::Fitting model to feature number 269, RHAMCAT_PWY__L_rhamnose_degradation_I_unclassified
2024-11-26 12:08:32.613869 INFO::Fitting model to feature number 270, RIBOSYN2_PWY__flavin_biosynthesis_I__bacteria_and_plants_
|+++++++++++++++++++++++++++++++++++++++++++++++ | 94% ~01s 2024-11-26 12:08:32.63179 INFO::Fitting model to feature number 271, RIBOSYN2_PWY__flavin_biosynthesis_I__bacteria_and_plants__unclassified
2024-11-26 12:08:32.636925 INFO::Fitting model to feature number 272, SALVADEHYPOX_PWY__adenosine_nucleotides_degradation_II
2024-11-26 12:08:32.641065 INFO::Fitting model to feature number 273, SALVADEHYPOX_PWY__adenosine_nucleotides_degradation_II_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++ | 95% ~00s 2024-11-26 12:08:32.651504 INFO::Fitting model to feature number 274, SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I
2024-11-26 12:08:32.655843 INFO::Fitting model to feature number 275, SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I_unclassified
2024-11-26 12:08:32.659967 INFO::Fitting model to feature number 276, SO4ASSIM_PWY__assimilatory_sulfate_reduction_I
|++++++++++++++++++++++++++++++++++++++++++++++++ | 96% ~00s 2024-11-26 12:08:32.674779 INFO::Fitting model to feature number 277, SO4ASSIM_PWY__assimilatory_sulfate_reduction_I_unclassified
2024-11-26 12:08:32.68018 INFO::Fitting model to feature number 278, SULFATE_CYS_PWY__superpathway_of_sulfate_assimilation_and_cysteine_biosynthesis
2024-11-26 12:08:32.684007 INFO::Fitting model to feature number 279, SULFATE_CYS_PWY__superpathway_of_sulfate_assimilation_and_cysteine_biosynthesis_unclassified
|+++++++++++++++++++++++++++++++++++++++++++++++++ | 97% ~00s 2024-11-26 12:08:32.694016 INFO::Fitting model to feature number 280, THRESYN_PWY__superpathway_of_L_threonine_biosynthesis
2024-11-26 12:08:32.699748 INFO::Fitting model to feature number 281, THRESYN_PWY__superpathway_of_L_threonine_biosynthesis_unclassified
2024-11-26 12:08:32.704276 INFO::Fitting model to feature number 282, TRNA_CHARGING_PWY__tRNA_charging
|+++++++++++++++++++++++++++++++++++++++++++++++++ | 98% ~00s 2024-11-26 12:08:34.423313 INFO::Fitting model to feature number 283, TRNA_CHARGING_PWY__tRNA_charging_unclassified
2024-11-26 12:08:34.428084 INFO::Fitting model to feature number 284, UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I
2024-11-26 12:08:34.438275 INFO::Fitting model to feature number 285, UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++++| 99% ~00s 2024-11-26 12:08:34.448918 INFO::Fitting model to feature number 286, VALSYN_PWY__L_valine_biosynthesis
2024-11-26 12:08:34.453079 INFO::Fitting model to feature number 287, VALSYN_PWY__L_valine_biosynthesis_unclassified
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=10s
2024-11-26 12:08:34.58786 INFO::Creating fits folder
2024-11-26 12:08:34.589477 INFO::Writing residuals to file maaslin3_path/fits/residuals_linear.rds
2024-11-26 12:08:34.601725 INFO::Writing fitted values to file maaslin3_path/fits/fitted_linear.rds
2024-11-26 12:08:34.606578 INFO::Writing residuals to file maaslin3_path/fits/residuals_logistic.rds
2024-11-26 12:08:34.609117 INFO::Writing fitted values to file maaslin3_path/fits/fitted_logistic.rds
2024-11-26 12:08:34.614567 INFO::Writing all the results to file (ordered
by increasing individual q-values): maaslin3_path/all_results.tsv
2024-11-26 12:08:34.668716 INFO::Writing the significant results without errors (those which have joint q-values less than or equal to the threshold of 0.100000 ) to file (ordered by increasing individual q-values): maaslin3_path/significant_results.tsv
2024-11-26 12:08:34.673903 INFO::Creating output figures folder
2024-11-26 12:08:34.677157 INFO::Writing summary plot of significant
results to file: maaslin3_path/figures/summary_plot.pdf
2024-11-26 12:08:37.321313 INFO::Writing association plots (one for each significant association) to output folder: maaslin3_path/figures
2024-11-26 12:08:37.354975 INFO::Plotting associations from most to least significant, grouped by metadata
2024-11-26 12:08:37.361949 INFO::Creating box plot for categorical data (linear),
Individual vs DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis
2024-11-26 12:08:37.376085 INFO::Creating box plot for categorical data (linear),
Individual vs DTDPRHAMSYN_PWY__dTDP__beta__L_rhamnose_biosynthesis_unclassified
2024-11-26 12:08:37.388663 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6703__preQ0_biosynthesis
2024-11-26 12:08:37.401455 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6703__preQ0_biosynthesis_unclassified
2024-11-26 12:08:38.251309 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5505__L_glutamate_and_L_glutamine_biosynthesis_unclassified
2024-11-26 12:08:38.264074 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5505__L_glutamate_and_L_glutamine_biosynthesis
2024-11-26 12:08:38.276778 INFO::Creating box plot for categorical data (linear),
Individual vs TRNA_CHARGING_PWY__tRNA_charging_unclassified
2024-11-26 12:08:38.289928 INFO::Creating box plot for categorical data (linear),
Individual vs TRNA_CHARGING_PWY__tRNA_charging
2024-11-26 12:08:38.303055 INFO::Creating box plot for categorical data (linear),
Individual vs FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation
2024-11-26 12:08:38.316019 INFO::Creating box plot for categorical data (linear),
Individual vs FUCCAT_PWY__fucose_degradation
2024-11-26 12:08:38.337765 INFO::Creating box plot for categorical data (linear),
Season vs PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:38.351696 INFO::Creating box plot for categorical data (linear),
Individual vs FUCCAT_PWY__fucose_degradation_unclassified
2024-11-26 12:08:38.365308 INFO::Creating box plot for categorical data (linear),
Individual vs PPGPPMET_PWY__ppGpp_metabolism
2024-11-26 12:08:38.378091 INFO::Creating box plot for categorical data (linear),
Individual vs PPGPPMET_PWY__ppGpp_metabolism_unclassified
2024-11-26 12:08:38.390689 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline_
2024-11-26 12:08:38.403682 INFO::Creating box plot for categorical data (linear),
Season vs PWY_724__superpathway_of_L_lysine__L_threonine_and_L_methionine_biosynthesis_II
2024-11-26 12:08:38.416918 INFO::Creating box plot for categorical data (linear),
Individual vs FUC_RHAMCAT_PWY__superpathway_of_fucose_and_rhamnose_degradation_unclassified
2024-11-26 12:08:38.43067 INFO::Creating box plot for categorical data (linear),
Individual vs COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic_
2024-11-26 12:08:38.444013 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian_
2024-11-26 12:08:38.457369 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6292__superpathway_of_L_cysteine_biosynthesis__mammalian__unclassified
2024-11-26 12:08:38.470427 INFO::Creating box plot for categorical data (linear),
Individual vs COA_PWY__coenzyme_A_biosynthesis_I__prokaryotic__unclassified
2024-11-26 12:08:38.482971 INFO::Creating box plot for categorical data (linear),
Individual vs THRESYN_PWY__superpathway_of_L_threonine_biosynthesis
2024-11-26 12:08:38.495986 INFO::Creating box plot for categorical data (linear),
Individual vs THRESYN_PWY__superpathway_of_L_threonine_biosynthesis_unclassified
2024-11-26 12:08:38.520826 INFO::Creating box plot for categorical data (linear),
Season vs THRESYN_PWY__superpathway_of_L_threonine_biosynthesis_unclassified
2024-11-26 12:08:38.533332 INFO::Creating box plot for categorical data (linear),
Season vs PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis_unclassified
2024-11-26 12:08:38.609099 INFO::Creating box plot for categorical data (linear),
Season vs THRESYN_PWY__superpathway_of_L_threonine_biosynthesis
2024-11-26 12:08:38.621831 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5154__L_arginine_biosynthesis_III__via_N_acetyl_L_citrulline__unclassified
2024-11-26 12:08:38.634083 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_3841__folate_transformations_II__plants_
2024-11-26 12:08:38.646251 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_3841__folate_transformations_II__plants__unclassified
2024-11-26 12:08:38.662591 INFO::Creating box plot for categorical data (linear),
Season vs PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine__unclassified
2024-11-26 12:08:38.676213 INFO::Creating box plot for categorical data (linear),
Season vs PWY_I9__L_cysteine_biosynthesis_VI__from_L_methionine_
2024-11-26 12:08:38.688638 INFO::Creating box plot for categorical data (linear),
Season vs UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I_unclassified
2024-11-26 12:08:38.700966 INFO::Creating box plot for categorical data (linear),
Season vs OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli__unclassified
2024-11-26 12:08:39.29242 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_1042__glycolysis_IV
2024-11-26 12:08:39.304885 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_1042__glycolysis_IV_unclassified
2024-11-26 12:08:39.316908 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic__unclassified
2024-11-26 12:08:39.5248 INFO::Creating box plot for categorical data (linear),
Season vs COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals__unclassified
2024-11-26 12:08:39.536771 INFO::Creating box plot for categorical data (linear),
Season vs PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria__unclassified
2024-11-26 12:08:39.548762 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6609__adenine_and_adenosine_salvage_III_unclassified
2024-11-26 12:08:39.560827 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing_
2024-11-26 12:08:39.572654 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing_
2024-11-26 12:08:39.584814 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing__unclassified
2024-11-26 12:08:39.602961 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6609__adenine_and_adenosine_salvage_III
2024-11-26 12:08:39.614981 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing__unclassified
2024-11-26 12:08:40.031074 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:40.04337 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7977__L_methionine_biosynthesis_IV
2024-11-26 12:08:40.055559 INFO::Creating box plot for categorical data (linear),
Individual vs PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing_
2024-11-26 12:08:40.073416 INFO::Creating box plot for categorical data (linear),
Season vs PANTOSYN_PWY__superpathway_of_coenzyme_A_biosynthesis_I__bacteria_
2024-11-26 12:08:40.087749 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate_unclassified
2024-11-26 12:08:40.100802 INFO::Creating box plot for categorical data (linear),
Season vs ARO_PWY__chorismate_biosynthesis_I_unclassified
2024-11-26 12:08:40.119191 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7242__D_fructuronate_degradation_unclassified
2024-11-26 12:08:40.131234 INFO::Creating box plot for categorical data (linear),
Individual vs GLUCONEO_PWY__gluconeogenesis_I_unclassified
2024-11-26 12:08:40.143489 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6387__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_I__meso_diaminopimelate_containing__unclassified
2024-11-26 12:08:40.156556 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I_unclassified
2024-11-26 12:08:40.173203 INFO::Creating box plot for categorical data (linear),
Individual vs PEPTIDOGLYCANSYN_PWY__peptidoglycan_biosynthesis_I__meso_diaminopimelate_containing__unclassified
2024-11-26 12:08:40.220375 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria_
2024-11-26 12:08:40.232523 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7242__D_fructuronate_degradation
2024-11-26 12:08:40.244683 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7560__methylerythritol_phosphate_pathway_II_unclassified
2024-11-26 12:08:40.260209 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation_unclassified
2024-11-26 12:08:40.274153 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6385__peptidoglycan_biosynthesis_III__mycobacteria__unclassified
2024-11-26 12:08:40.28635 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6507__4_deoxy_L_threo_hex_4_enopyranuronate_degradation
2024-11-26 12:08:40.298925 INFO::Creating box plot for categorical data (linear),
Individual vs GLUCONEO_PWY__gluconeogenesis_I
2024-11-26 12:08:40.311668 INFO::Creating box plot for categorical data (linear),
Season vs METH_ACETATE_PWY__methanogenesis_from_acetate
2024-11-26 12:08:40.331334 INFO::Creating box plot for categorical data (linear),
Season vs METH_ACETATE_PWY__methanogenesis_from_acetate_unclassified
2024-11-26 12:08:40.343639 INFO::Creating box plot for categorical data (linear),
Season vs UDPNAGSYN_PWY__UDP_N_acetyl_D_glucosamine_biosynthesis_I
2024-11-26 12:08:40.356204 INFO::Creating box plot for categorical data (linear),
Season vs X1CMET2_PWY__folate_transformations_III__E__coli__unclassified
2024-11-26 12:08:40.587933 INFO::Creating box plot for categorical data (linear),
Season vs OANTIGEN_PWY__O_antigen_building_blocks_biosynthesis__E__coli_
2024-11-26 12:08:40.600239 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5686__UMP_biosynthesis_I_unclassified
2024-11-26 12:08:40.612552 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6628__superpathway_of_L_phenylalanine_biosynthesis
2024-11-26 12:08:40.624563 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7790__UMP_biosynthesis_II_unclassified
2024-11-26 12:08:40.637617 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7791__UMP_biosynthesis_III_unclassified
2024-11-26 12:08:40.650059 INFO::Creating box plot for categorical data (linear),
Season vs PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation
2024-11-26 12:08:40.662123 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7977__L_methionine_biosynthesis_IV_unclassified
2024-11-26 12:08:40.674083 INFO::Creating box plot for categorical data (linear),
Season vs GALACTUROCAT_PWY__D_galacturonate_degradation_I_unclassified
2024-11-26 12:08:40.90299 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic_
2024-11-26 12:08:40.915313 INFO::Creating box plot for categorical data (linear),
Season vs COA_PWY_1__superpathway_of_coenzyme_A_biosynthesis_III__mammals_
2024-11-26 12:08:40.933244 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing__unclassified
2024-11-26 12:08:40.945581 INFO::Creating box plot for categorical data (linear),
Season vs GALACTUROCAT_PWY__D_galacturonate_degradation_I
2024-11-26 12:08:40.957966 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6609__adenine_and_adenosine_salvage_III_unclassified
2024-11-26 12:08:40.970167 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing__unclassified
2024-11-26 12:08:40.987472 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6628__superpathway_of_L_phenylalanine_biosynthesis_unclassified
2024-11-26 12:08:41.000163 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5686__UMP_biosynthesis_I
2024-11-26 12:08:41.226893 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6163__chorismate_biosynthesis_from_3_dehydroquinate
2024-11-26 12:08:41.240537 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7790__UMP_biosynthesis_II
2024-11-26 12:08:41.253019 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7791__UMP_biosynthesis_III
2024-11-26 12:08:41.264982 INFO::Creating box plot for categorical data (linear),
Season vs PWY0_1296__purine_ribonucleosides_degradation_unclassified
2024-11-26 12:08:41.277636 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6969__TCA_cycle_V__2_oxoglutarate_synthase__unclassified
2024-11-26 12:08:41.290527 INFO::Creating box plot for categorical data (linear),
Individual vs ANAEROFRUCAT_PWY__homolactic_fermentation
2024-11-26 12:08:41.302502 INFO::Creating box plot for categorical data (linear),
Individual vs HSERMETANA_PWY__L_methionine_biosynthesis_III
2024-11-26 12:08:42.17203 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6609__adenine_and_adenosine_salvage_III
2024-11-26 12:08:42.184107 INFO::Creating box plot for categorical data (linear),
Season vs PWY4LZ_257__superpathway_of_fermentation__Chlamydomonas_reinhardtii_
2024-11-26 12:08:42.196319 INFO::Creating box plot for categorical data (linear),
Season vs ARO_PWY__chorismate_biosynthesis_I
2024-11-26 12:08:42.208749 INFO::Creating box plot for categorical data (linear),
Individual vs COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis
2024-11-26 12:08:42.221677 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6731__starch_degradation_III
2024-11-26 12:08:42.234312 INFO::Creating box plot for categorical data (linear),
Season vs COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis_unclassified
2024-11-26 12:08:42.246575 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I
2024-11-26 12:08:42.258479 INFO::Creating box plot for categorical data (linear),
Season vs PWY_3001__superpathway_of_L_isoleucine_biosynthesis_I_unclassified
2024-11-26 12:08:42.271303 INFO::Creating box plot for categorical data (linear),
Season vs GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation_unclassified
2024-11-26 12:08:42.2844 INFO::Creating box plot for categorical data (linear),
Season vs PWY0_1298__superpathway_of_pyrimidine_deoxyribonucleosides_degradation_unclassified
2024-11-26 12:08:42.297077 INFO::Creating box plot for categorical data (linear),
Individual vs PWY4LZ_257__superpathway_of_fermentation__Chlamydomonas_reinhardtii_
2024-11-26 12:08:42.309131 INFO::Creating box plot for categorical data (linear),
Season vs PYRIDNUCSYN_PWY__NAD_de_novo_biosynthesis_I__from_aspartate__unclassified
2024-11-26 12:08:42.327515 INFO::Creating box plot for categorical data (linear),
Individual vs ANAEROFRUCAT_PWY__homolactic_fermentation_unclassified
2024-11-26 12:08:42.344916 INFO::Creating box plot for categorical data (linear),
Season vs PWY0_1296__purine_ribonucleosides_degradation
2024-11-26 12:08:42.357606 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7199__pyrimidine_deoxyribonucleosides_salvage_unclassified
2024-11-26 12:08:42.37082 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5097__L_lysine_biosynthesis_VI
2024-11-26 12:08:42.384726 INFO::Creating box plot for categorical data (linear),
Season vs SER_GLYSYN_PWY__superpathway_of_L_serine_and_glycine_biosynthesis_I
2024-11-26 12:08:42.398065 INFO::Creating box plot for categorical data (linear),
Individual vs GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate__unclassified
2024-11-26 12:08:42.410309 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7199__pyrimidine_deoxyribonucleosides_salvage
2024-11-26 12:08:42.422416 INFO::Creating box plot for categorical data (linear),
Season vs GLUCUROCAT_PWY__superpathway_of__beta__D_glucuronosides_degradation
2024-11-26 12:08:42.467794 INFO::Creating box plot for categorical data (linear),
Season vs PWY_7953__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_III__meso_diaminopimelate_containing_
2024-11-26 12:08:42.479942 INFO::Creating box plot for categorical data (linear),
Season vs DARABCATK12_PWY__D_arabinose_degradation_I
2024-11-26 12:08:42.492338 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6700__queuosine_biosynthesis_I__de_novo_
2024-11-26 12:08:42.507412 INFO::Creating box plot for categorical data (linear),
Individual vs PWY0_1586__peptidoglycan_maturation__meso_diaminopimelate_containing__unclassified
2024-11-26 12:08:42.519699 INFO::Creating box plot for categorical data (linear),
Season vs PWY_702__L_methionine_biosynthesis_II_unclassified
2024-11-26 12:08:42.542026 INFO::Creating box plot for categorical data (linear),
Individual vs GLYCOLYSIS__glycolysis_I__from_glucose_6_phosphate_
2024-11-26 12:08:42.554816 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_1269__CMP_3_deoxy_D_manno_octulosonate_biosynthesis
2024-11-26 12:08:42.568324 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_6700__queuosine_biosynthesis_I__de_novo__unclassified
2024-11-26 12:08:42.580358 INFO::Creating box plot for categorical data (linear),
Individual vs COBALSYN_PWY__superpathway_of_adenosylcobalamin_salvage_from_cobinamide_I
2024-11-26 12:08:42.59287 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6608__guanosine_nucleotides_degradation_III
2024-11-26 12:08:42.605496 INFO::Creating box plot for categorical data (linear),
Season vs PWY_702__L_methionine_biosynthesis_II
2024-11-26 12:08:42.833896 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7560__methylerythritol_phosphate_pathway_II
2024-11-26 12:08:42.846456 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_7851__coenzyme_A_biosynthesis_II__eukaryotic_
2024-11-26 12:08:42.858585 INFO::Creating box plot for categorical data (linear),
Season vs PWY0_162__superpathway_of_pyrimidine_ribonucleotides_de_novo_biosynthesis
2024-11-26 12:08:42.87087 INFO::Creating box plot for categorical data (linear),
Individual vs COMPLETE_ARO_PWY__superpathway_of_aromatic_amino_acid_biosynthesis_unclassified
2024-11-26 12:08:42.884614 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5097__L_lysine_biosynthesis_VI_unclassified
2024-11-26 12:08:42.897723 INFO::Creating box plot for categorical data (linear),
Season vs PWY_6386__UDP_N_acetylmuramoyl_pentapeptide_biosynthesis_II__lysine_containing_
2024-11-26 12:08:42.916416 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5130__2_oxobutanoate_degradation_I
2024-11-26 12:08:43.14704 INFO::Creating box plot for categorical data (linear),
Individual vs PWY_5130__2_oxobutanoate_degradation_I_unclassified
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